Query= MSMg01no306_p24.b1 MSMg01no306_p24.b1 CHROMAT_FILE:
MSMg01no306_p24.b1 PHD_FILE: MSMg01no306_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:56 2005
(710 letters)
>mm_chr1_126356737_126357844
Length = 1108
Score = 1224 bits (633), Expect = 0.0
Identities = 688/707 (97%), Gaps = 4/707 (0%)
Strand = Plus / Plus
Query: 5 gaattccaacttactatccataatttctgggcagttaatgtagaagaatacaagcaacta 64
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattccaacttacaatccataatttctgggcagttaatgtaaaagaatacaagcaacta 264
Query: 65 atcacattacct-tcagtcaagaacaaagagaaaataaatgtaccgttgcctgcttaatt 123
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 atcacatta-ctgtcagtcaagaacaaagagaaaataaatgtaccattgcctgcttaatt 323
Query: 124 gtttgctttcagctgtctttctcctcactgttcagtagtctttgattggggaatgggaat 183
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct: 324 gtttgctttcagctgtctttctcctctctgttcagtagtctttgactggggaatggaaat 383
Query: 184 gatgctacctaatatccaaggtgataagttttggagatatgactgattttcaatgtttat 243
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct: 384 gatgctacctaatatccaaggtgataatttttggagacatgactgattttcaatgttttt 443
Query: 244 gttgcatgttcctaaaataatacataataaatggacaatcctccacatatacttatgaat 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attgcatgttcctaaaataatacataataaatggacaatcctccacatatacttatgaat 503
Query: 304 tgagttgaaataaagagataccacttgactatagctaaaaagacagatgattatctaaag 363
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 504 tgagttgaaataaagagataccacttgactatagttaaaaagacagatgactatctaaag 563
Query: 364 ttttctagttgtttaatttgctactgtttagaaaatgaaaacgtatccaattcctttcct 423
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 ttttctagttgtttaatttgctactgtttagaaaatgaaaacatatccaattcctttcct 623
Query: 424 gctggagcttcacttttggggtgaggttcatccaagcacagctcaaggtggtcaacagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctggagcttcacttttggggtgaggttcatccaagcacagctcaaggtggtcaacagaa 683
Query: 484 ggatttccaaggtgtactgcagtgggaaggaaaggctggtccttgacttttgcactgctt 543
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggat--ccaaggtgtactgcagtgggaaggaaaggctggtccttgacttttgcactgctt 741
Query: 544 ctgggtttctatgaaactcaggaggctaagtggatctacctggtcagttataaaatctag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctgggtttctatgaaactcaggaggctaagtggatctacctggtcagttataaaatctag 801
Query: 604 aaatttctttttgaaattaatgaatttcagagataaaatgtactctctgtgtatatctat 663
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 802 aaatttctttttgaaattaatgaatttcagagataaaatgtactctctgtgtgtatctat 861
Query: 664 ctatgtttctctctttcatccactggcagttacacacacacacacac 710
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ttatgtttctctctttcatccactggcagttacacacacacacacac 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1108
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1098
Effective search space: 768600
Effective search space used: 768600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no306_p24.g1 MSMg01no306_p24.g1 CHROMAT_FILE:
MSMg01no306_p24.g1 PHD_FILE: MSMg01no306_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:56 2005
(677 letters)
>mm_chr1_126425638_126426714
Length = 1077
Score = 1247 bits (645), Expect = 0.0
Identities = 669/677 (98%), Gaps = 1/677 (0%)
Strand = Plus / Minus
Query: 1 tgtattgtcgcagaatgaactctaaaatctgaaaaggaaccatgccgttccacatgaaga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tgtattgtcacagaatgaactctaaaatctgaaaaggaaccatgccgttccacatgaaga 930
Query: 61 tagaaatgggtgatttccaaatattcatgtttgatcttgtattatccactcctttccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 tagaaatgggtgatttccaaatattcatgtttgatcttgtattatccactcctttccatt 870
Query: 121 cagatagtataattctgcacccctactttatgtgagtcactagccacatatgtctattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cagatagtataattctgcacccctactttatgtgagtcactagccacatatgtctattta 810
Query: 181 catggtattactaaaagtaaaagctgagcttcttggttgtattaataaatgcattttaag 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 809 catggtattactaaaagtaaaagctgagcttcttggttgtactaataaatgcattttaag 750
Query: 241 tgttcaattgttataggtggctagaggctattgcttgagacagatatagacattctatat 300
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 749 tgttcaattgttata-gtggctagaggctattgcttaagacagatatagacattctatat 691
Query: 301 tatccaggaattttctactgggcaatgtagcagtctagttcaaaacaatatctggtgaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 690 tatccaggaattttctactgggcaatgtagcagtctagttcaaaacaatatttggtgaag 631
Query: 361 gattcttggatgctatttaaaataaacgttgaagaaaatgattttgcctcaggttgtaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gattcttggatgctatttaaaataaacgttgaagaaaatgattttgcctcaggttgtaat 571
Query: 421 caggagacggagatgctcacatgctaaatttaaaatgtgagctagtcatagaatcttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caggagacggagatgctcacatgctaaatttaaaatgtgagctagtcatagaatcttata 511
Query: 481 gctgaaaaaccctccatggtaatttaattcagctttacttattttattgctgtggaaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gctgaaaaaccctccatggtaatttaattcagctttacttattttattgctgtggaaact 451
Query: 541 gaggtctaaaaggctaaatgttctacataatgtcaccaaggatttcatgacaaagtttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaggtctaaaaggctaaatgttctacataatgtcaccaaggatttcatgacaaagtttta 391
Query: 601 tcatagggattgccagtgataggcattcacaaattttacaataaaggatataaaattaat 660
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 390 tcatagggatttccagtgataggcattcacaaattttaaaataaaggatataaaattaat 331
Query: 661 tattgcactaattctag 677
||||| |||||||||||
Sbjct: 330 tattgtactaattctag 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
