Query= MSMg01no307_b14.b1 MSMg01no307_b14.b1 CHROMAT_FILE:
MSMg01no307_b14.b1 PHD_FILE: MSMg01no307_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:03 2005
(664 letters)
>mm_chr1_92156994_92158060
Length = 1067
Score = 1174 bits (607), Expect = 0.0
Identities = 651/671 (97%), Gaps = 11/671 (1%)
Strand = Plus / Minus
Query: 1 gtaataataacatttttagaacattacaagatgaggatataattgctttaattagtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gtaataataacatttttagaacattacaagatgaggatataattgctttaattagtaatt 808
Query: 61 atatgacatcatggctggggagattttattttgagagtgaaacttcccatgattcacagt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atatgacatcatggctggggatattttattttgagagtgaaacttcccatgattcacagt 748
Query: 121 gaaattattattttgggtcttgcggtgtccccctgatggctcatagctctggcatctccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaaattattattttgggtcttgcggtgtccccctgatggctcatagctctggcatctccg 688
Query: 181 aatggatgtaccatatctgccgctcaagcacacattcttgtgaaagaacgcttagcttcc 240
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 687 aatggatgtaccatatctgacgctcaagcacacattcttgtgaaagaacacttagcttcc 628
Query: 241 aatttcatgtaccttgacctctgagtctgaagccaagacagcccttctctataagaggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aatttcatgtaccttgacctctgagtctgaagccaagacagcccttctctataagaggaa 568
Query: 301 acaggttactatctgtcttctttgtttttttctctgtggttagcacccc----acaagag 356
||||||| ||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct: 567 acaggttgctatctgtcttctttatttttttctctgtggttagta----tttgacaagag 512
Query: 357 tgatgtgtccaacaggtgtgtcccatctgacttttgacatcagagctcatggctagagca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgatgtgtccaacaggtgtgtcccatctgacttttgacatcagagctcatggctagagca 452
Query: 417 ttccactgtgatggatggggaagggaggtaaagagggtgtatctgacctgtgttt---aa 473
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 451 ttccactgtgatggatggggaagggaggtaaagagagtgtatctgacctgtgttttaaaa 392
Query: 474 aaaaaaatcacaagataaatttggagctctgttgctgcagggatataaaggagaggacac 533
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 391 aaaaaaatcgcaagataaatttggagctctgttgctgcagggatatagaggagaggacac 332
Query: 534 agggaggccaatgttgattcatcttgctagaaccaacactccctgaaatatcaccaaaac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agggaggccaatgttgattcatcttgctagaaccaacactccctgaaatatcaccaaaac 272
Query: 594 agcagacaaagctccaggattccctccacaaatggttgtgaagaaactgaccaagagttt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agcagacaaagctccaggattccctccacaaatggttgtgaagaaactgaccaagagttt 212
Query: 654 ttaaaaataag 664
|||||||||||
Sbjct: 211 ttaaaaataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1067
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1057
Effective search space: 691278
Effective search space used: 691278
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_b14.g1 MSMg01no307_b14.g1 CHROMAT_FILE:
MSMg01no307_b14.g1 PHD_FILE: MSMg01no307_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:04 2005
(648 letters)
>mm_chr1_91972006_91973053
Length = 1048
Score = 1180 bits (610), Expect = 0.0
Identities = 637/648 (98%), Gaps = 4/648 (0%)
Strand = Plus / Plus
Query: 1 caatttgaaaatggccttaaggtataatgactttactggtttaaaggtttcttaatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttgaaaatggccttaaggtataatgactttactggtttaaaggtttcttaatttga 260
Query: 61 tgagagaaacagaagttatcttccagtattcctgcagagctaacagtatcctagaggctg 120
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 261 tgagagaaacagaagttatcttccagtattcctgcagagctaataggatcctagaggctg 320
Query: 121 gtctttaggattaaagtttaaggaatgaggtggctgccagtagatttatatttctggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctttaggattaaagtttaaggaatgaggtggctgccagtagatttatatttctggaca 380
Query: 181 ttgaaatgaatggaaaacatgatcttatatcttttcacccaggagctgtgttctagttag 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaatgaatggaaaacatgatctcatatcttttcacccaggagctgtgttctagttag 440
Query: 241 ctttaatcctccatgcgacacagcttaagagtcatcagaggagggtggagagatggctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttaatcctccatgcgacacagcttaagagtcatcagaggagggtggagagatggctca 500
Query: 301 acggttaagagcattgactggtcttccacaggtaccgagttcccctctcagcaaccacat 360
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 501 acggttaagagcattgactgctcttccacaggtaccgagttcaattctcagcaaccacat 560
Query: 361 agtggctcacaaccatctgtaataagatctgctgccctcttctggtgtgtctgaagacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtggctcacaaccatctgtaataagatctgctgccctcttctggtgtgtctgaagacag 620
Query: 421 ctaccgtgtactcacataaatagaataaacaaacaaacaaacaaacaaacaataacataa 480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ctaccgtgtactcacataaatagaataaacaaacaaacaaacaaacaa----taacataa 676
Query: 481 aaaagagtcatcagagaaggaagtctcaattgaaaggtcatcttgatcagagtgatctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaaagagtcatcagagaaggaagtctcaattgaaaggtcatcttgatcagagtgatctgt 736
Query: 541 ggggagctatctttatcataaattgatataggagagtccagcccactgtgggtgacacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggggagctatctttatcataaattgatataggagagtccagcccactgtgggtgacacca 796
Query: 601 ttccctagggaggaggtcctagacttggctggagttaatgctgtgtgg 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttccctagggaggaggtcctagacttggctggagttaatgctgtgtgg 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
