BAC Information

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BAC

Clone NameMSMg01-307F23
Chromosome1 (Build37)
Map Location 31,509,330 - 31,509,616
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307F23.T7 (MSMg01no307_f23.b1)MSMg01-307F23.TJ (MSMg01no307_f23.g1)
ACCAG431758AG431759
length733732
length of high quality
(start - end)		686 (48 - 733)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no307_f23.b1 PHD_FILE: MSMg01no307_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:24 2005CHROMAT_FILE: MSMg01no307_f23.g1 PHD_FILE: MSMg01no307_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCTACTCTGCCCCCACACAATTCTGACAAAGACCACAAACCA
CCCTGGCCTTGCTAGAATTTCCTGCGACGTTAATAACTGTGATGCTAATA
ACTGACCCATAAGATCAAAATGTACTACTGCTTTGCTGACCAAATCATAA
TAACCCACCATAGGGGCAGGCAGAGTTAGTCACTAGGCCACAGGTAGTCA
CCCTATACAAACCAACCAATGCCTGAAAAGGTTACTTGCTACACCAATGA
AAATAAGCCAGCTACCCTGTTGCCCAAATTTGCCCATTCCAAGGTATAAA
AGGTGTCTTCTTTCTTTGTGCTGGGTCTCTCCTCTGGCCTGTGTGCTGAG
AGGGGGTCCCCCAACATGTTGGATCAATAAAAAAAAATCCTCTTGTGGTT
TTCAGCGATGGTAATCTGTGTGGTCTTTGTGACACACTACAACAGACAGA
CTACAACAATACCATAGAATTGTCTGTATTCCAGCCAGAGGTGGAATTAA
AGGTGTGTTGTTTGTCTGTATTCCAACTAGATCATATCTTTGGATATTAC
CCCTTGACAGAGCAACCAAACTGTTGGATTAAAATTCCTTTACAGTGCTC
TGTGACAAGCAAATTTTAGAGAAGAAAATGCTTGGTAGCAATAAAATAGT
TTGGACTAAACTAAGACTGAAATCTTTAGCACN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGAAATTATGCCTTTGTTGAA
ACTGCAGAACTCTCCTTGGAACAGACACCATGTTTCTTGACAGGGGAAGC
CAGCCAGGGAGCAGAGCAGGCAAGCAAGGCTGGCAGCCAGTGATCTTATT
GAATATTGTTTGCCATAGAGAGATACAGGAGGCTGACTGCCCCAGAGGAT
TGCTAACAGGCAGCATATCTAAAAAGAAAATTTTCTTTGCAGTGAAAGAG
CAAAAATTCTGATATCTGAAAACTACTTTTTCCCCCAGTTGAAAGAATGT
CCCGAAAAATAATTTTTCCAAGAACACCCCCATTATCCTGTGAGAAATAA
AAAGAAGACAGCACATCACCAGTAGAAGATCAAAATAATCTCGGTGGGGA
AGAGATATATAAAGCTAAGTAAATAAGGACTATTATGAATGTCTCCTCAT
GAAATATAGAAGGTGAACAAATATTATTAACATGTTGTCATATAAGGGAA
TATCATGAAGCATGAATATAAAAATAGAGAACATATATTTTTATCTGCTG
AAAAAATGGTGAGAGATTAATATTGAACTGCCCTACTGTGAAATAAACAA
AAATAAATAAATATGAAAAATCTGAAGTACAAGGGTGGGGGCATGGCCAT
TTCTACAATATATGTGGCTGCCTGGAAGGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_f23.g1 MSMg01no307_f23.g1 CHROMAT_FILE:
MSMg01no307_f23.g1 PHD_FILE: MSMg01no307_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:24 2005
         (287 letters)



>mm_chr1_31509130_31509817
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggaaattatgcctttgttgaaactgcagaactctccttggaacagacaccatgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actggaaattatgcctttgttgaaactgcagaactctccttggaacagacaccatgtttc 428

                                                                       
Query: 61  ttgacaggggaagccagccagggagcagagcaggcaagcaaggctggcagccagtgatct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgacaggggaagccagccagggggcagagcaggcaagcaaggctggcagccagtgatct 368

                                                                       
Query: 121 tattgaatattgtttgccatagagagatacaggaggctgactgccccagaggattgctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tattgaatattgtttgccatagagagatacaggaggctgactgccccagaggattgctaa 308

                                                                       
Query: 181 caggcagcatatctaaaaagaaaattttctttgcagtgaaagagcaa-aaattctgatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 caggcagcatatctaaaaagaaaattttctttgcagtgaaagagcaagaaattctgatat 248

                                                          
Query: 240 ctgaaaactactttttcccccagttgaaagaatgtcccgaaaaataa 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctgaaaactactttttcccccagttgaaagaatgtcccgaaaaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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