BAC Information

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BAC

Clone NameMSMg01-307H21
Chromosome1 (Build37)
Map Location 117,303,545 - 117,303,835
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307H21.T7 (MSMg01no307_h21.b1)MSMg01-307H21.TJ (MSMg01no307_h21.g1)
ACCAG431837AG431838
length733734
length of high quality
(start - end)
349 (385 - 733)294 (441 - 734)
definitionCHROMAT_FILE: MSMg01no307_h21.b1 PHD_FILE: MSMg01no307_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:34 2005CHROMAT_FILE: MSMg01no307_h21.g1 PHD_FILE: MSMg01no307_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATCTTTCCCAAACTTTTATCATGAATGGGTGTTGGATCT
TGTCAAATGCTTTTTCTGCTTCTACCCAGATGATCATGTGGTTTTTGTCT
TTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAA
CCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTG
CTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTT
GCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGG
GTCTTTCTGTGGTTTAGTTATCAGAGTAATAGTGGCTTCATAAAATGAGT
TGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATT
GGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTT
CTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAAC
TTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTC
CAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGA
TTTCTTCAGGATCTGTTGTTATGTCTCCCTTTT
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAAGTACATTGGAATCTCACAT
CTATATGGCTGCATCTAATTGGCCCAAATTCATGTCTTCATACCTGCACA
ACAAAGGTTTTATCCTTTGACATATCTCTCTGAACCTCTGTCATATTTCC
TTACCTATAGAAAAATAATGAAGAATTGCTGACATTATAGCTGCTTATTA
AGATTTGAAAATTTGAAAAGAAATCATATACTAATATATATTTTTGCTTG
TCTACAAGATAGGTGAAATTCCCTATTTACAGGTTATGAATGTTGATGAT
AGTAATTACTTTCATTAANTTAACCACCCCCCCCTACTTATAGTATTAGA
AAACAGAATCACTGAACTGAGTACTTAGAAAAAAAAAATCACTCATGCTT
AATTTACTGATGGTCTTACTGTGATGTTTCATAAGATCAGCAAAATATTT
GCTATTAGATATTGACTACTCAACATTGCCTTTTTCATATTCAAATGAGA
TTTTATTGGATTTCCTGAAAGCTGAGTTTATTAAAATTGACCAGTAAATC
TAGAATCATGTTATGTTCTATTTTGCCTGGGACTGTTCTTTTTCTCATTT
TATATTATGTGTACTTGCTATTATTTTATCATTTTGCTCTCNAAAGTGAC
ATGCTTTCACCACCCTTTGAGAAGATTCATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_h21.g1 MSMg01no307_h21.g1 CHROMAT_FILE:
MSMg01no307_h21.g1 PHD_FILE: MSMg01no307_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:34 2005
         (294 letters)



>mm_chr1_117303343_117304036
          Length = 694

 Score =  549 bits (284), Expect = e-161
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcatgcttaatttactgatggtcttactgtgatgtttcataagatcagcaaaatatttgc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcatgcttaatttactgatggtcttactgtgatgtttcataagatcagcaaaatatttgc 434

                                                                       
Query: 63  tattagatattgactactcaacattgcctttttcatattcaaatgagattttattggatt 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttagatattgactactcaacattgcctttttcatattcaaatgagattttattggatt 374

                                                                       
Query: 123 tcctgaaagctgagtttattaaaattgaccagtaaatctagaatcatgttatgttctatt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcctgaaagctgagtttattaaaattgaccagtaaatctagaatcatgttatgttctatt 314

                                                                       
Query: 183 ttgcctgggactgttctttttctcattttatattatgtgtacttgctattattttatcat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgcctgggactgttctttttctcattttatattatgtgtacttgctattattttatcat 254

                                                              
Query: 243 tttgctctcnaaagtgacatgctttcaccaccctttgagaagattcatgat 293
           ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttgctctcaaaagtgacatgctttcaccaccctttgagaagattcatgat 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)