BAC Information

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BAC

Clone NameMSMg01-307I21
Chromosome1 (Build37)
Map Location 20,842,741 - 20,842,989
singlet/doubletsinglet
Overlap genenone
Upstream genePkhd1, Il17a, Il17f, Mcm3
Downstream genePaqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307I21.T7 (MSMg01no307_i21.b1)MSMg01-307I21.TJ (MSMg01no307_i21.g1)
ACCAG431881AG431882
length735847
length of high quality
(start - end)
249 (69 - 317)---
definitionCHROMAT_FILE: MSMg01no307_i21.b1 PHD_FILE: MSMg01no307_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:38 2005CHROMAT_FILE: MSMg01no307_i21.g1 PHD_FILE: MSMg01no307_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANGACTCCGCGGAATTCAA
TGTTTTATATCAACTATTCTAAATATACACTGTTCTAAGTATAATACTAT
TCTATTCTACCTCTTACACAATTGAAGGAAATTCAGAAATCAATTAGTAT
GTTGAAAACCAGAAGATATTTGCTCCACAGTTTGGGGTATTTGCTTTGCA
AGGTATATGGTTTCAGTTTGCAGCACCCACTCTGTAGCCTACAACTACCC
TTAATTCCAATTTGAGGGGATACACTACCCTCTTCTGGATTCTGCTGGCA
CCAGGGATACATTTTGTACTCATCCGTACATACAAACCAAACACTCCTAC
ATAAAATAAAATAATAAATCTTAACCAAAAGAGAAAAGAAAAGAACAAGG
CATGGAAGCTCACCCCCCGCCATCTTAGCATTCTGGAGGCTGAGGCAGGA
GGGTTGGCAGTTTGAAGTCTGCCTGGACTACAGCTTAGGCTATATAGCAA
ATCTTTAATTCAAAAAACAAATCAAGGCTGGTCATAATGGTGTACATCTG
TGGTGTCAGCAAAGAGGAGACCGAAGCAGAAGACTAGATCAACTATTATT
TAAAATTAATACATAATCCATCTTTATATACATATGTATGAGGGGGGGCG
TTGGGGAGGAAACTCAGAAGTGGAGAGCAAATACCCCACTTAGAAAAATA
ATTAAAAAAATAGTAAAAATATAAAACAACCCAGG
AAAAAAGAGAAANNNNAAAANAAACAAACCCCCCCCCCNACCCCNANNNN
NAGGATGAAGTGGGTAGNCTGGNGGNCGNCTGGNCTTTCGGGACTCGACN
ACNCNANNGNNGGATTGGCCAAAAAAAAGGGGGNNANNGNNGANGGNANG
NNNNNNNNNGNNGNNNGGGNGTTTGGCCCAANNNGANNAGNAGNANAGAA
GNNNGNGAAAGGANANGGGNNNAAAAGAAAGAGAGAGNNNNAGGGAGGAG
GGAAANAAGAANNAGGAAAGGAAAGAAGGGAGGAAAANGGAAAAAAGGAN
GGNAAGAAAGAAAGATTTTTTTTTTAAGAGGNAGAGNNAAGTAGAGGAAG
GGGAAAGGTGAANGAGAAGAAGAGAAGAGAAGAAAAAATTTTGAGTGGTT
TTAAAGAGAAAAAGNAAGNAAGGAAAAAGGAGTTTTTTTTTTTTCTCCCC
CCCCCCCCCCAATAGGAATGTTTGAATGAGATAGAAAAAGAAAACCCCCC
CTATAAAAAAAAAAAAAAAAATGTGTGGGGGGGGGGGGTTGTCTATTTTG
GATTTTTTGGTTTGGTGTGTTAATCGCGTTCGTACAGGGCAGTTGAGGGG
AGAGAAGATTTTACGGAGGTATTGAAGATATTAGGAGTGTAAAAGTTATG
TATGGATAAGATGATAATAAAAAAAAAGAAGAATATTAATAGTTTATGGG
AATTTGGGATAGTTTTATAGAAGGAATTATAGGAGGAGTAAGGAAGAGAA
AGAAGAATTTTTTTTTTTTTTTTTGGAGAAAAGGGAATAAAAATTAAAAT
AACGGATAATAAATGAGTAAGAAATGTATTTTACGAATGTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_i21.b1 MSMg01no307_i21.b1 CHROMAT_FILE:
MSMg01no307_i21.b1 PHD_FILE: MSMg01no307_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:38 2005
         (249 letters)



>mm_chr1_20842687_20843335
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaatatacactgttctaagtataatactattctattctacctcttacacaattgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctaaatatacactgttctaagtataatactattctattctacctcttacacaattgaagg 244

                                                                       
Query: 61  aaattcagaaatcaattagtatgttgaaaaccagaagatatttgctccacagtttggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaattcagaaatcaattagtatgttgaaaaccagaagatatttgctccacagtttggggt 184

                                                                       
Query: 121 atttgctttgcaaggtatatggtttcagtttgcagcacccactctgtagcctacaactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atttgctttgcaaggtatatggtttcagtttgcagcacccactctgtagcctacaactac 124

                                                                       
Query: 181 ccttaattccaatttgaggggatacactaccctcttctggattctgctggcaccagggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ccttaattccaatttgaggggatacactaccctcttctggattctgctggcaccagggat 64

                    
Query: 241 acattttgt 249
           |||||||||
Sbjct: 63  acattttgt 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)