Query= MSMg01no307_j20.b1 MSMg01no307_j20.b1 CHROMAT_FILE:
MSMg01no307_j20.b1 PHD_FILE: MSMg01no307_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:43 2005
(665 letters)
>mm_chr1_185787151_185788215
Length = 1065
Score = 1247 bits (645), Expect = 0.0
Identities = 660/665 (99%)
Strand = Plus / Minus
Query: 1 catagctttcctaccctatgcaatgactcaaatgtttgggtacaccaatgaagggcttga 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 catagctttcctaccctaggcaatgactcaaatgtttgggtacaccaatgaagggcttga 806
Query: 61 ccatgggcatatctactgggcaggggtatgttcaaggtcactcactagtcaggcatgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ccatgggcatatctactgggcaggggtatgttcaaggtcactcactagtcaggcatgctc 746
Query: 121 ttccatttcaattctctgaaaccagcccatgttttagtaaaacaggctcagtgtgcacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttccatttcaattctctgaaaccagcccatgttttagtaaaacaggctcagtgtgcacat 686
Query: 181 ctctatgatccaagcccctcctgagaccaccctagggaagaaggacctagcttcttctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctctatgatccaagcccctcctgagaccaccctagggaagaaggacctagcttcttctag 626
Query: 241 cttcttgacctgtagtgagatagctataccatccttgtgggtaagatttgactgtctgaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcttgacctggagtgagatagctataccatccttgtgggtaagatttgactgtctgaa 566
Query: 301 tcctctagcctacccactagggggcaattgagcagaactgataactgccccatttagaca 360
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 565 tcctctagcctacccactagagggcaattgagcagaactgataactggtccatttagaca 506
Query: 361 taaatgtgttttatcacataaaatccataagcaaggtgtgtgtaaccttccttctaggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaatgtgttttatcacataaaatccataagcaaggtgtgtgtaaccttccttctaggtc 446
Query: 421 tcctcatctccaatccctaggaagctcctccagcaatactttcccatgcgggctcctctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctcatctccaatccctaggaagctcctccagcaatactttcccatgcgggctcctctt 386
Query: 481 gacccagggcttctcatggttgtggagatttgctggcactaggacaatgcaggcaggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacccagggcttctcatggttgtggagatttgctggcactaggacaatgcaggcaggaaa 326
Query: 541 gagactggtttggaaatgaatgtgtctgccagggtggggccggctgttagggagagctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagactggtttggaaatgaatgtgtctgccagggtggggccggctgttagggagagctca 266
Query: 601 agtgtgagaagttaagccttccacatgctccttctcacaaacacttggcaccaagtgctc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgtgagaagttaagccttccacatgctccttctcacaaacacttggcaccaagtgctc 206
Query: 661 cacac 665
|||||
Sbjct: 205 cacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_j20.g1 MSMg01no307_j20.g1 CHROMAT_FILE:
MSMg01no307_j20.g1 PHD_FILE: MSMg01no307_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:43 2005
(668 letters)
>mm_chr1_185626932_185627997
Length = 1066
Score = 1203 bits (622), Expect = 0.0
Identities = 656/668 (98%), Gaps = 2/668 (0%)
Strand = Plus / Plus
Query: 1 cttatactctgggagaatggctgggctctgcttcttagctttgagagaacgctgccaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttatactctgggagaatggctgggctctgcttcttagctttgagagaatgctgccaaca 260
Query: 61 gtgggacccagaatgctgccttagagccaatggcagcctgttgttctcttctacattgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggacccagaatgctgccttagagccaatggcagcctgttgttctcttctacattgtc 320
Query: 121 ttgtaactgcttttctggtcatatataaaattctcaaaccaagttctatcttgaggaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaactgcttttctggtcatatataaaattctcaaaccaagttctatcttgaggaacc 380
Query: 181 aggtagttcgttggcaagcacgggaaaccagtgggagccctgatcactctacctcctcag 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aggtagttcgttggcaagcacgggaaaccattgggagccctgatcactctacctcctcag 440
Query: 241 cctcaaatgaatgatttgtgacatgtgagcccaagatcaccatcatctgttattgtggtt 300
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcaaatgaatgagttgtgacgtgtgagcccaagatcaccatcatctgttattgtggtt 500
Query: 301 ttcagttccttgaacttggtggctaggcagaatcagctggtctgcccactagttctcaac 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttcagttccttgaacttggtggctaggcagaatcagctggtctggccactagttctcaac 560
Query: 361 ctgatgcctttggcaaacctttatctccagaaatagttacatcatgattcataacagtag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgacgcctttggcaaacctttatctccagaaatagttacatcatgattcataacagtag 620
Query: 421 caaaattacagttataaagacgcaatgaaaataattctctctttgggaatcaccacagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaattacagttataaagacgcaatgaaaataattctctctttgggaatcaccacagca 680
Query: 481 tcagggactgcactaatgggtggcagtgttagggaggttaagaatccctgggttagaaaa 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 tcagggactgcactaatgggtggcagtgttagggaggttgagaatccctgggttagaaaa 740
Query: 541 aacaattggtggatcatgcatgtctagagaaaggcttgggctgtctatcaggacagtgtg 600
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacaattggtggaccatgcttgtctagagaaaggcttgggctgtctatcaggacagtg-- 798
Query: 601 atgatttggaggaaggccagaccatcagagcagatgtctcttcagtgatgttcctgccca 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 799 atgatttggaggaaggccagaccatcagagcagatgtctcttcagtgatgtccctgccca 858
Query: 661 tcttcttt 668
||||||||
Sbjct: 859 tcttcttt 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1066
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1056
Effective search space: 694848
Effective search space used: 694848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
