BAC Information

Click to search

BAC

Clone NameMSMg01-307M21
Chromosome1 (Build37)
Map Location 42,569,444 - 42,569,732
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307M21.T7 (MSMg01no307_m21.b1)MSMg01-307M21.TJ (MSMg01no307_m21.g1)
ACCAG432058AG432059
length721743
length of high quality
(start - end)
680 (42 - 721)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no307_m21.b1 PHD_FILE: MSMg01no307_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:57 2005CHROMAT_FILE: MSMg01no307_m21.g1 PHD_FILE: MSMg01no307_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGTTTTTAACTGCTGAGTAGTACTCCATTGTGTAAATGTACCACATT
TTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGCTATTTCCATCTTCT
GGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTAT
TACGTGTTGGAGCATCTTCTGGAGTATATGCCCAGGAGTGGTATTGCTGG
GTCCTCAGGTAGTATTATATCCAGTTTTCTGAGAAACCATCAGACTGATT
TCTAGAGTGGTTGTACCAGCTTTCAATCCCACCAGCAATGGAGGAATGTT
CCTCTTTGTCCACATCCTTGCCAACATCTGATTTCACCTGAATTTTTCAT
CTTAGCCACTCTGACCGCCATGAGGTGGAATCTCAGGGTTGTTTTGATTT
GCATTTCCCTGATGCCTTTCTTGATGAATTATTAATGTGGAAGGGCTCAG
CCTACTATTGCAAGTACCACCTCTGAAGTCGGTCCTGTGTTGTACAAGAG
AACAAAGAGAACAAACCATGAGGAGAAAGCTAACAAGCAGCATTCCTTCA
TGGTTTCTGAATCTGTTTCTACTCCAAGTTCTTGCCTTGATTCCTGCCTA
GGTTCCTAGAACCTAGGTTAACCAAGGAAATCCTTTTCTCCCCCAAGTTC
CATTTGGCCATTGTTTTATCA
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTGGTGAGTGAATTAATATTTTT
TATTCTTTCTTTGATGAATTCCATACTTGATGAGGGTTTTAAATCTCTTA
AGAATGTTTATAGTCCTGCTTGCTTGTGGCTCTCTCCGGGCAAACCCTGC
AGCATCGAGGGTAAATTCCACTCCGTACTCTCTGCATTCCATTATCCAGG
CTACAGCTCTGCTTTGCCTGCGATTGGTTGGGCTTGAACCAGAGTTCATG
TCTACAACATCAGCCTCAAGACTCTTGTTGCTCAAGGCGGCTTGCTGGCC
CTTGTTGTGGAGAATATTTATTTTGTCCTGCGCAGCGAAGCTGCCAAAAA
TGTGTGTTTTGTTTATTGTCCCCCCCCCCCGTTGAAATTACATTACTCAG
GGATGCGTCTCCTTTTTCACTTTCGCTCTTCTGTTTTCATTATCCGTTTT
TCCCACCCTTTCCTATTCTGCTTATTCCCGATTTTCCCTTTCCATGTTTT
GTGCCTTTCCTTCGTACTTCCTTCTACAATTTTTTTCTACTTTCCCCCCT
TTTCCTTCCTTTTTTCCTCCCCTCTTCTTCGTTCTCCCTCCCCCTTTTTC
CCATCTACCACTCTCCCATCTTCCTTCCCCTTCTTTTTTTTCCCCTTCCT
ATCAGCACTATTTACCTCTCTTCTTTTCCCCACTTTTATTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_m21.g1 MSMg01no307_m21.g1 CHROMAT_FILE:
MSMg01no307_m21.g1 PHD_FILE: MSMg01no307_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:57 2005
         (290 letters)



>mm_chr1_42569244_42569932
          Length = 689

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctggtgagtgaattaatattttttattctttctttgatgaattccatacttgatgagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 489 acctggtgagtgaattaatattttttattctttctttgatgaattccataattgatgagg 430

                                                                       
Query: 61  gttttaaatctcttaagaatgtttatagtcctgcttgcttgtggctctctccgggcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gttttaaatctcttaagaatgtttatagtcctgcttgcttgtggctctctccgggcaaac 370

                                                                       
Query: 121 cctgcagcatcgagggtaaattccactccgtactctctgcattccattatccaggctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cctgcagcatcgagggtaaattccactccgtactctctgcattccattatccaggctaca 310

                                                                       
Query: 181 gctctgctttgcctgcgattggttgggcttgaaccagagttcatgtctacaacatcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gctctgctttgcctgcgattggttgggcttgaaccagagttcatgtctacaacatcagcc 250

                                                             
Query: 241 tcaagactcttgttgctcaaggcggcttgctggcccttgttgtggagaat 290
           ||||||| |  |  ||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcaagacac-gggggctcaaggcggcttgctggcccttgttgtggagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)