GCTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACCAATCCCTTAGAACTTTTTTCTGCTCTGCCCTGAGCCC
CAGGGATCACATTTCAGATTTGTTCGCAGGAAGAAGAAGCCTCTTTTTCT
CAATTGCTAATTCTTTGCCAGTTGAGATTTCTAGTTCCTCATGAAGGTAC
TGGTCTGATTCTTTGCCCAGTGCACATGCAGAGTGAGAGACAAGATGCCT
GTGGACCACAGACAGGCTAACCACCCCTCCACCCATCTCACTTCCTTCTT
CTTATCGCTGCCCAGAGATTTTCTCAGTGAATTGTTAAGCAATGCGTCTA
AATACCTGGTTTGTTATTTTTCCCCCCGCCCCTACAGAAAATTTTTTTCT
TTAATACTGTTTGTCCACACCTACAAGAATAGAGAGAATGTGTGTGTGTG
TGTGTATATATATATATATACATATATATATATATATATATATATATATG
TATATATATATATATACACATAAGCAAAAACATACCATGTGTGCATACAA
GTGTGAAAGCTTGAGATCACAGCCCAGCCTGCTCATTGCAGTTTCAGTCT
TACATTGTCATTGTTTTTATTGTGACTCATTTGCATGGCATCCAATTTCA
TAGAAACACTATTTTTACAGAGAGAAATTTTCATCCCAAGGATTTCCTAA
TTGTCCATCTTATTGGTCAACCTCAATGA

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCATGAACATAGAAATCAAAT
AATTCCAACATTTCAACATCCAGCTGGCATTGAAAAGTAATCTTTCACAT
ATTTAAATCTGACTTTAATTAAATACAATAGAATGCCTTACAGAAAACTC
AAGCCTTGCATGTTTTTTAACCAATAAGACAGAAGTATTGAGAGCACATA
GAAAGTATTGGGGATTTTCATACTTGCATTATACTAATGCAACATCGTTA
TAATGTATAGCTATAGGTTAATTTAGTCACCGGTAGTCTTATTACTAACA
TTAATTTATTTTTTATTTCACACCGCTACGCTACAATCTTCAACAAATTT
CATGGAAATAAATGTTATTTATGGAAAATAGGCTTTGCAAATACAATTTA
TTTTTCAGCTGGAAATTAGTTCACGAGAAATAATTCCCCAACGTGAGCTG
ACTTTGTGTAATGATCTTTGTGGTTGTTTTGATGTCCCTCTTTTGGGGCT
TTTCTGTAATGAATGCATGCTGGGCTGACCTCAAGGCATACTAACATGAA
TGGCAGATGCTACTGGCCAAATCTCTGGCATGGCTTACAGGGATCTCTTC
TGTGGGGAAGCTCGGTGTTCAGTAAGAGGTCAGCCTGGGGCGGAGAGCCG
CCTGCTCTGGTTTGGTCATTCCTCT

Query= MSMg01no307_n21.b1 MSMg01no307_n21.b1 CHROMAT_FILE:
MSMg01no307_n21.b1 PHD_FILE: MSMg01no307_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:02 2005
         (189 letters)



>mm_chr1_81189646_81190234
          Length = 589

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaagaagaagcctctttttctcaattgctaattctttgccagttgagatttctagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaagaagaagcctctttttctcaattgctaattctttgccagttgagatttctagttc 260

                                                                       
Query: 61  ctcatgaaggtactggtctgattctttgcccagtgcacatgcagagtgagagacaagatg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcgtgaaggtactggtctgattctttgcccagtgcacatgcagagtgagagacaagatg 320

                                                                       
Query: 121 cctgtggaccacagacaggctaaccacccctccacccatctcacttccttcttcttatcg 180
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 321 cctgtggaccacagacaggctaaccaccccttcacccatctcacttacttcttcttatcg 380

                    
Query: 181 ctgcccaga 189
           |||||||||
Sbjct: 381 ctgcccaga 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no307_n21.g1 MSMg01no307_n21.g1 CHROMAT_FILE:
MSMg01no307_n21.g1 PHD_FILE: MSMg01no307_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:02 2005
         (286 letters)



>mm_chr1_81296449_81297134
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgcatgaacatagaaatcaaataattccaacatttcaacatccagctggcattgaaaagt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgcatgaacatagaaatcaaataattccaacatttcaacatccagctggcattgaaaagt 425

                                                                       
Query: 63  aatctttcacatatttaaatctgactttaattaaatacaatagaatgccttacagaaaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aatctttcacatatttaaatctgactttaattaaatacaatagaatgccttacagaaaac 365

                                                                       
Query: 123 tcaagccttgcatgttttttaaccaataagacagaagtattgagagcacatagaaagtat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcaagccttgcatgttttttaaccaataagacagaagtattgagagcacatagaaagtat 305

                                                                       
Query: 183 tggggattttcatacttgcattatactaatgcaacatcgttataatgtatagctataggt 242
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tggggattttcatacttgcgttatactaatgcaacatcgttataatgtatagctataggt 245

                                                     
Query: 243 taatttagtcaccggtagtcttattactaacattaatttatt 284
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taatttagtcaccggtagtcttattactaacattaatttatt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)