Query= MSMg01no307_p06.b1 MSMg01no307_p06.b1 CHROMAT_FILE:
MSMg01no307_p06.b1 PHD_FILE: MSMg01no307_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
(679 letters)
>mm_chr1_160616767_160617844
Length = 1078
Score = 1216 bits (629), Expect = 0.0
Identities = 664/677 (98%), Gaps = 5/677 (0%)
Strand = Plus / Minus
Query: 5 gaattctttggattccc--gaggatgattctccatttgcagcaagctctgtagaactcag 62
|||||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 878 gaattctttgga--gccatgaggatgattctccattttcagcaagctctgtagaactcag 821
Query: 63 agtgcagtctagaaagcttgttgggtagaatcccttgtagtatttactaactctaagctg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 agtgcagtctagaaagcttgttgggtagaatcccttgtagtatttactaactctaagctg 761
Query: 123 gtaaactcctcctgtgaaaaaaacatctcttttctgctttaatcaacacttccttacata 182
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gtaaactcctcctatg-aaaaaacatctcttttctgctttaatcaacacttccttacata 702
Query: 183 aatgggattttttttcttttgcacccatttatattaaacatttcaaaaatgaataactac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aatgggattttttttcttttgcacccatttatattaaacatttcaaaaatgaataactac 642
Query: 243 attcatttaattcttcatctgggcagtaagtatatggggggggcagtgtgtgtgtggtat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 attcatttaattcttcatctgggcagtaagtatatggggggggcagtgtgtgtgtggtat 582
Query: 303 atatctgaattcctaaaatgacaggagaaaggagggtgaagctgatgtccaaggaaagat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atatctgaattcctaaaatgacaggagaaaggagggtgaagctgatgtccaaggaaagat 522
Query: 363 gttgagcttcacccaccaaagtccaggggctaagagttctgtgacaacactggagggaaa 422
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gttgagctttaagcagcaaagtccaggggctaagagttctgtgacaacactggagggaaa 462
Query: 423 gttgtgttttttccaatggctgcaggtcagaggaattcacacaaacactctacctgctga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gttgtgttttttccaatggctgcaggtcagaggaattcacacaaacactctacctgctga 402
Query: 483 ctaaatcgcctctcagaaggatgctctgtgctttccctatcagcttctgcagtttagcca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctaaatcgcctctcagaaggatgctctgtgctttccctatcagcttctgcagtttagcca 342
Query: 543 ggcaggttttccaaaaggaatcaccactaaggactgtggtagcactttcctctcaatcct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggcaggttttccaaaaggaatcaccactaaggactgtggtagcactttcctctcaatcct 282
Query: 603 tccattgtgtgctaccattagccagccttctcaagagtcgaaagaggtgggggctggggt 662
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 281 tccattgtgtgctaccattagccagccttctcaggagtcgaaagaggtgggggctggggt 222
Query: 663 gtagaatgaaagagggc 679
|||||||||||||||||
Sbjct: 221 gtagaatgaaagagggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space: 714492
Effective search space used: 714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_p06.g1 MSMg01no307_p06.g1 CHROMAT_FILE:
MSMg01no307_p06.g1 PHD_FILE: MSMg01no307_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
(628 letters)
>mm_chr1_160448641_160449662
Length = 1022
Score = 1135 bits (587), Expect = 0.0
Identities = 616/629 (97%), Gaps = 8/629 (1%)
Strand = Plus / Plus
Query: 1 ttaaaccataaagccttattcttcatttacttagctctggaacctgcttttaaaatctta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttaaaccataaagccttattcttcatttacttagctctggaacctgcttttaaaatttta 260
Query: 61 tttctatttccctttatctgacagtgaccatcgtttgcacacctcatcactggccaccta 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctatttccctttatcagacagtgaccatcgtttgcacacctcatcactggccaccta 320
Query: 121 atttcaagccatatttcggatgtttcactttaagctccatgggcatttgtagctatagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcaagccatatttcggatgtttcactttaagctccatgggcatttgtagctatagct 380
Query: 181 cagtagcagtaaacgtaacaaatttggacctgaagtaggtcagtaggttccaatatagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtagcagtaaacgtaacaaatttggacctgaagtaggtcagtaggttccaatatagct 440
Query: 241 tgtgatactaaagtcaggatttgccatacatgaaacaatgtactgatctctaata-tgct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 441 tgtgatactaaagtcaggatttgccatacatgaaacaatgtactgatctctaatact-ct 499
Query: 300 ttagattcttctaaaactacaaagttacccattttttactatgcccaccacaatgtggag 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 ttagattcttctaaaactacaaagttacccattttttactatgcccaccagaatgtggag 559
Query: 360 ctgagtgtggttgtgatggaggtcaagtggctgttagttggtatagaggccctaagaggc 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgagtgtggttgggatggaggtcaagtggctgttagttggtatagaggccctaagaggc 619
Query: 420 agtagcttctaggtagatcttaaaatgtgtgagcaaaaatctgaaacaaaaattgcccca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtagcttctaggtagatcttaaaatgtgtgagcaaaaatctgaaacaaaaattgcccca 679
Query: 480 ctcacacggttcagactcttctcctctattggagtcattctcttcttcttcttttttttt 539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 680 ctcacacggttcagactcttctcctctattggagtcattctcttctt------ttttttt 733
Query: 540 tttttattaagttttatcttcataaagaggaaataacatttaaagctgttgttctattta 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttttattaagttttatcgtcataaagaggaaataacatttaaagctgttgttctattta 793
Query: 600 tatccatctgaaatttcccttccttagga 628
|||||||||||||||||||||||||||||
Sbjct: 794 tatccatctgaaatttcccttccttagga 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1022
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1012
Effective search space: 625416
Effective search space used: 625416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
