BAC Information

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BAC

Clone NameMSMg01-308C21
Chromosome1 (Build37)
Map Location 191,034,535 - 191,034,859
singlet/doubletsinglet
Overlap geneKcnk2
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneLOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C21.T7 (MSMg01no308_c21.b1)MSMg01-308C21.TJ (MSMg01no308_c21.g1)
ACCAG432330AG432331
length707763
length of high quality
(start - end)
193 (407 - 599)346 (73 - 418)
definitionCHROMAT_FILE: MSMg01no308_c21.b1 PHD_FILE: MSMg01no308_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:26 2005CHROMAT_FILE: MSMg01no308_c21.g1 PHD_FILE: MSMg01no308_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAGAGAGTANCCATNGACGGAANCNGCGNGCTTTCNGCACCCAGGACC
CCNNGCNCNCAAGGCGGGGAGAGACAGAGNGCCGNNNAACCCCCGGCANC
AGAGNGGCAGAAGGNACCAACCAGGGCNAGCCCCTGCTNCCNCCAGGCNG
CNCCTTCCNAGGCACAGCAGCTTNGCCAGGGNAAGGGGAACTGAACCAAA
GGAGACCCGGCAGAGGGAGGATTTTTCTTTGCTACAGCTAGTTTGTAAGG
ATAAGTAAAGGCCAGAAAAGCGTTACCACAGAAAGGCTGTTTCTGGTATC
TGAAGAAGNCAGGGAGACAGCGGNGAAGTTTTTTTTTTTTACATCCCCCC
CCAGAGGTTGATTATGCTTAAAGCTGGGCTGCCTACCCACAAAGATGAAT
GCCACCTGCCTGCCACCTGCCTGCTGCCTACCTGAATTTCTTCCTTCCCT
CCCCACCCTTCCCCTTTCTTCCCACCCTCCTTTCCCTTCCCTTTCCTAAC
CTAACATTTCCTTTTTTACCCTATCCTTCTCTTTCCAACTTCTTCCTTTT
GGCCCTCCTTCCTACCTTCCTTTCCCCTCCCTCCCCCTCTCTTTCCTTCC
ATTCAGACCATTTTCCTGGAAAAACCATTATTTTTTTTTTTTGAATTCCA
ACACGCGCCTATGGCCTACAATTCCTTCATCCAATCATCTGCTGACGTAC
ATCCAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAAGTGGCAACACTTCTCAGCTCTGAA
CTCTGGGTTGCATCTCAAGCTAACAGCAGCACACCTACCAAGTCCCACCC
AGGTCACCTAGGCTAACACCTCATTCTCTTCCTCATTCCTGTTGCCTCTA
CAATGGCCCTTTCTAAGTCTAAGTCCTTGAAGCTACAGGAAGATGAAAGC
AATAGGTGACACCTGGAAGATTAAAGGGGAGACATTAACAGATTTCCATT
TTATAGCATTTGAAATGTCTTTATGTCTGCGTGCGTGCGCGTGCCTGCGT
GCCTGCGTGTCGGTGCGTGGGTGCGTGGGTGCGTGCGTGCGTGCGTGCGT
ACGTGCGTGCGTGCGTGCCCCGCCGCGTGCGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTTTGTGNCCTTCAACACCTCTTACCCTCTTATCTC
TTTTCCTCCCCCATTATTCCTTTTTTATTCTTACTTAACTCCCTTACCTT
ACTTACTACCCCCATTTACTACCCCCTCCTTCCCCAATTTCTATCATAAT
CAAACACACACTCCACCTAATACTCCCACCATTCTATATCTATAACCCAT
TTATTACATACAACATCACACCCAATTTTTTTTTTCTTTCTATCCCAAAT
TACCTTATCCCTCACTTTTAAATATTATCTAAATTCCTTCCTCTCTTACA
CCCAACATATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c21.g1 MSMg01no308_c21.g1 CHROMAT_FILE:
MSMg01no308_c21.g1 PHD_FILE: MSMg01no308_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:26 2005
         (346 letters)



>mm_chr1_191034375_191035120
          Length = 746

 Score =  574 bits (297), Expect = e-168
 Identities = 318/325 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagtggcaacacttctcagctctgaactctgggttgcatctcaagctaacagcagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctaagtggcaacacttctcagctctgaactctgggttgcatctcaagctaacagcagcac 426

                                                                       
Query: 61  acctaccaagtcccacccaggtcacctaggctaacacctcattctcttcctcattcctgt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 425 acctaccaagtcccacccaggtcacctcggctaacacctcattctcttcctcattcctgt 366

                                                                       
Query: 121 tgcctctacaatggccctttctaagtctaagtccttgaagctacaggaagatgaaagcaa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 tgcctctacaatggccctttctaagtctgagtccttgaagctacaggaagatgaaagcaa 306

                                                                       
Query: 181 taggtgacacctggaagattaaaggggagacattaacagatttccattttatagcatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 taggtgacacctggaagattaaaggggagacattaacagatttccattttatagcatttg 246

                                                                       
Query: 241 aaatgtctttatgtctgcgtgcgtgcgcgtgcctgcgtgcctgcgtgtcggtgcgtgggt 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct: 245 aaatgtctttatgtctgcgtgcgtgcgcgtgcctgcgtgcctgcgcgtctgcgcgtgcgt 186

                                    
Query: 301 gcgtgggtgcgtgcgtgcgtgcgtg 325
           ||||| |||||||||||||||||||
Sbjct: 185 gcgtgcgtgcgtgcgtgcgtgcgtg 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)