BAC Information

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BAC

Clone NameMSMg01-308E05
Chromosome1 (Build37)
Map Location 58,521,987 - 58,522,317
singlet/doubletsinglet
Overlap geneOrc2l
Upstream geneLOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1
Downstream geneBC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308E05.T7 (MSMg01no308_e05.b1)MSMg01-308E05.TJ (MSMg01no308_e05.g1)
ACCAG432392AG432393
length705733
length of high quality
(start - end)
330 (46 - 375)252 (71 - 322)
definitionCHROMAT_FILE: MSMg01no308_e05.b1 PHD_FILE: MSMg01no308_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:32 2005CHROMAT_FILE: MSMg01no308_e05.g1 PHD_FILE: MSMg01no308_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTTCCTATTTCAAGAGGATCCGCGGAATTCTCCATCTTCTCCGAGCTGTA
GGCCCCTGCCTGCCACCTTTCACTCACTATGGACAGTCCCCTCTGAACTA
ATGGCTTTATTTGTTGAAAATAACTAGCAGTTGTACTAATCACTTTTAAT
AAAGGAAACCCAGGTTATCAGGCAGGAATAGGAAAGTGCATGAGGAGAGT
TTTCAGTGTGCATAGGCTGTCGCCTGAGAACAGACCCAGGTGCCCGTGGC
TGAGCTGAGCTTCCTCTGCAGGGAACTGCGGCACACACTGCACTCCTACT
TGTCTTGCCGCCAGCATTGCACCAGCAGTCCAGAATTCCTGTCTGCCTGA
ACAAATGATTTCTAATTATTTTACGTGCATACATGTTTTACCCCACTCTG
CACCATGAATGTGTGCATGCCTAGTGCCTGTACAACCTAGAAGAGAGCGA
TGGATCCCTGGAACTGGATTTATTGACAGGTATGAGCTGCCACACTGGTG
CTGAGAATCAAACCCATCCTCTGGAAGAGCTGTTATATTCTTAGTGCTGA
GCCGTCTCTACTATTCCAAAAGATAGTCCTGAGGCCCAAGCTATTTGATT
GTCTTCCATATGATGCGATGGCTGTAGTGATGCCTGTTCTTTTTTCATTC
CCGTCTTTCATATTATTATACCCGCACACATCCTTGTGTTTCCTTCTTCC
CCTAA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTCTCGCGAAATTCAGTTCCTGGCACCCACATCAGGTGGC
TCACAAGCACCAACAACTCCGGCTCCCGGGGGACTCAACATCCCCAGCTG
CTGTGGGCACCCACGCTCATGGCACATGTTCACAGAGACATAAAACTATG
TATGTATCATTTCAAAAAAAATAAAAACCTGCCTTTCAATGAAGTGAATG
TGGTTAGAGAAATGGGTCTGCAGTTAAGAACACGCCCTGCTGTTACTGGG
CGCCTGAGTTTACTCCCCAGCTCCTCATGTCAGGTAGCTCACAACCACCT
GTAACTCCAGTTCCATGAAATCTGACGTCTCTAGCCTCCAATGTCACCCA
CACTCACATGCACTTAACCCCACCCCACAGCTGTACGAAACTAAAAATAA
AATTAGATTCTTTTGAAAAGAGACTAAGAACTAGGCTTGGCGGTGCACAC
CTTTAATCCCAGCACTCGGTAGGCAGAGGCAGGAGGATCTCTGGTCTACC
TAGTGAGTTCCAGGACTATGTAAAAAGACTGTCTCACCCCCCACTCTCTC
TTTTCCCCCACCCTAAGGTTTCGTTCAGTGTCTAGTTTGTTCAGCCTGCC
TTTTTTTTTATCTTACATCCCCAGGCCCCTTGTTTTCCTCCTTCAACATA
CATTTTATCGGCATTAGCTCTTTCTAGAATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_e05.b1 MSMg01no308_e05.b1 CHROMAT_FILE:
MSMg01no308_e05.b1 PHD_FILE: MSMg01no308_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:32 2005
         (330 letters)



>mm_chr1_58521787_58522518
          Length = 732

 Score =  571 bits (295), Expect = e-167
 Identities = 322/331 (97%), Gaps = 2/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtaggcccctgcctgccacctttcactcactatggacagtcccctctgaac-taatgg 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 531 ctgtaggcccctgcctgccacctttcactcactatggacagtcccctctgaacataatgg 472

                                                                       
Query: 60  ctttatttgttgaaaataactagcagttgtactaatcacttttaataaaggaaacccagg 119
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 471 ctttatttgttgaaaataactagcagttgtactaatcatttttaataaaggaaacccagg 412

                                                                       
Query: 120 ttatcaggcaggaataggaaagtgcatgaggagagttttcagtgtgcataggctgtcgcc 179
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 411 ttatcaggcaggaataggaaagtgcatgaggagagttttgagtgtgcatatgctgtcgcc 352

                                                                       
Query: 180 tgagaacagacccaggtgcccgtggctgagctgagcttcctctgc-agggaactgcggca 238
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 351 tgagaacagacccaggtacccgtggctgagctgagcttcctctgccagggaactgtggca 292

                                                                       
Query: 239 cacactgcactcctacttgtcttgccgccagcattgcaccagcagtccagaattcctgtc 298
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 291 cacactgcactcccacttgtcttgccgccagcattgcaccagcagtccagaattcctgcc 232

                                          
Query: 299 tgcctgaacaaatgatttctaattattttac 329
           |||||||||||||||||||||||||||||||
Sbjct: 231 tgcctgaacaaatgatttctaattattttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 732
Length adjustment: 9
Effective length of query: 321
Effective length of database: 723
Effective search space:   232083
Effective search space used:   232083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)