BAC Information

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BAC

Clone NameMSMg01-308E13
Chromosome1 (Build37)
Map Location 71,490,383 - 71,568,965
singlet/doubletdoublet
Overlap geneLOC629101
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12
Downstream geneAtic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308E13.T7 (MSMg01no308_e13.b1)MSMg01-308E13.TJ (MSMg01no308_e13.g1)
ACCAG432408AG432409
length789742
length of high quality
(start - end)		249 (74 - 322)583 (76 - 658)
definitionCHROMAT_FILE: MSMg01no308_e13.b1 PHD_FILE: MSMg01no308_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:34 2005CHROMAT_FILE: MSMg01no308_e13.g1 PHD_FILE: MSMg01no308_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,490,383 - 71,490,631)(71,568,605 - 71,568,965)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAAAGGACCGCGGA
ATTCAGCATCTTTTCTTAAAAGTGAAGCAACAGAAAAAGGAGCTCTTGAA
AAGCAGCAGTGGAAGAAACAGATATTTCAACAGAAGCTTGGGAAAACAAG
AGAGACATTGATTACAAAGCCACTGAAAATTGAGGGAAATTTTTATTTAT
TTAATTAATCTAGAAGAAAGTCCAGCATTTAAGTGGTAAAAGTCCCAGAA
ACAGGTAGCAAAGAAAACAAATGGCATGAAGTGAGAATAAAACAAGAATC
CTTGCTAGACTGGAAAGCATTTTATGATATAAAAGGACTCACTATAGACC
TACACCAGACATATTTTTTTTTACTCCTCGCCCACCGGAGGGCATGGATA
GATTTTAAAAGTCATCTCCCCCCCCCCCACAGATATACATGGACTCAAAG
CTCATCTATCAGCATAAACGTATCACTCCGTACAGTTACTAATGAAGAAA
GAACAATAATCGTATCCTCAAATTTTCCTTGTGCAGATCCAGAAGTGTGT
CACAATGCAGGATGTATTGATAGCCTCTCTATTTCTATCAATATGTCCCA
CCATCTTTTACGCATTCTTTGTATTCTTGACTATCTCCTTCCTTTGTGCT
CCTACTATTCTGATACGCATAACCTTTTTTTTTCTGCCTTTCCCCGTAAT
ATTCGCCCCCTACCAATTTTTCGATCTTCTTTATTCCTTTGCCTCACTCA
TCCTTCCTTTTTAATCACTCCGTATGAACTCTCCCCCTC

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTTCACTTGCTTTATGCAGGAGG
AAGACTCATGGAGAATTTGTTTTCCTTATTCTCAAGTATCAGCTCTTTCC
CCCCTCCCCCCTGAAATCATGAACAGAGTTCTTCTCTGTTCATGTGTTTG
GTGAGAATTTGGTAAGATAATGGTAGTGAATTTCAAGTTAAATTGTGGAC
ACCAGAAACATGTACCAGAATCCTAATCCCCAGTATGATGGAGGTGACTT
TATAAGGACATACAGCGTAAATGTAATTAAGTTACAGTGAAGTGCTACCG
AATTTGGGCGGACCTGTTTCAACGTGATTGGTGTCCTTATATAGGAAGAG
AGGAAGAAACACAAGCCCACCCACAACTGCAAGGATGCATATGCATGCAT
GGGTACAAGGAAGTGTGTGACATGTTCACACAGGTGGCCGGGTGAACATG
GAGGCAGAGAATGGAATTAAGCCACCACCAAGCCAAAATACCTGGGAGTA
CAAGATAGAAGGGACAGGGAGGACTGCTCCTCCCTCGGATACCTGGGAGG
AAGCACACCTCTGCTAGTACTTTGATTTTCAGCTCCCAGCCTCCAGCACT
GTGAAGAAATAAAAGTCTGTTGTGTCAAGCCAACCAGTTGATAATATATT
GTTACAACACTGCATTGTCCTCTCAGACACCATTCTTGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_e13.b1 MSMg01no308_e13.b1 CHROMAT_FILE:
MSMg01no308_e13.b1 PHD_FILE: MSMg01no308_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:34 2005
         (249 letters)



>mm_chr1_71490183_71490831
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcaacagaaaaaggagctcttgaaaagcagcagtggaagaaacagatatttcaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcaacagaaaaaggagctcttgaaaagcagcagtggaagaaacagatatttcaacag 260

                                                                       
Query: 61  aagcttgggaaaacaagagagacattgattacaaagccactgaaaattgagggaaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttgggaaaacaagagagacattgattacaaagccactgaaaattgagggaaatttt 320

                                                                       
Query: 121 tatttatttaattaatctagaagaaagtccagcatttaagtggtaaaagtcccagaaaca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttatttaattaatccagaagaaagtccagcatttaagtggtaaaagtcccagaaaca 380

                                                                       
Query: 181 ggtagcaaagaaaacaaatggcatgaagtgagaataaaacaagaatccttgctagactgg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagcaaagaaaacaaatggcatgaagtgagaataaaacaagaatccttgctagactgg 440

                    
Query: 241 aaagcattt 249
           |||||||||
Sbjct: 441 aaagcattt 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no308_e13.g1 MSMg01no308_e13.g1 CHROMAT_FILE:
MSMg01no308_e13.g1 PHD_FILE: MSMg01no308_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:34 2005
         (583 letters)



>mm_chr1_71568605_71569587
          Length = 983

 Score =  659 bits (341), Expect = 0.0
 Identities = 356/361 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttcacttgctttatgcaggaggaagactcatggagaatttgttttccttattctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatttcacttgctttatgcaggaggaagactcatggagaatttgttttccttattctcaa 302

                                                                       
Query: 61  gtatcagctctttcccccctcccccctgaaatcatgaacagagttcttctctgttcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtatcagctctttcccccctcccccctgaaatcatgaacagagttcttctctgttcatgt 242

                                                                       
Query: 121 gtttggtgagaatttggtaagataatggtagtgaatttcaagttaaattgtggacaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtttggtgagaatttggtaagataatggtagtgaatttcaagttaaattgtggacaccag 182

                                                                       
Query: 181 aaacatgtaccagaatcctaatccccagtatgatggaggtgactttataaggacatacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaacatgtaccagaatcctaatccccagtatgatggaggtgactttataaggacatacag 122

                                                                       
Query: 241 cgtaaatgtaattaagttacagtgaagtgctaccgaatttgggcggacctgtttcaacgt 300
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 121 cgtaaatgtaattaagttacagtgaagtgctaccgaattaggggggacctgtttcaacgt 62

                                                                       
Query: 301 gattggtgtccttatataggaagagaggaagaaacacaagcccacccacaactgcaagga 360
           |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||
Sbjct: 61  gattggtgtccttatataggaagagaggaagaaacacaagcttacccataactgcaagga 2

            
Query: 361 t 361
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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