Query= MSMg01no309_g13.b1 MSMg01no309_g13.b1 CHROMAT_FILE:
MSMg01no309_g13.b1 PHD_FILE: MSMg01no309_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:59 2005
(313 letters)
>mm_chr1_90853165_90853876
Length = 712
Score = 549 bits (284), Expect = e-161
Identities = 302/310 (97%), Gaps = 5/310 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtctgttccttgaatagggtagatttgcaaaaatactactaggctaggttaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtctgttccttgaatagggtagatttgcaaaaatactactaggctaggttaat 264
Query: 65 ctcagcactaggaggctgggtaggagattctcaagttcaaggctagcctgggccacataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcagcactaggaggctgggtaggagattctcaagttcaaggctagcctgggccacataa 324
Query: 125 tgagttttaggctagcctgagctacagtgtaagactctgcctccaccaatggagtgcaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagttttaggctagcctgagctacagtgtaagactctgcctccaccaatggagtgcaac 384
Query: 185 atggagcccaggagttccaagctcttgacctcgacactatatcctcacctaatacctaat 244
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 385 atggagcccaggagttccaagctcttgacattgacactatatcctcacctaatacctaat 444
Query: 245 ttccaaagtgttgatcttggaaccccat--aaagtgtgagatggatctgaagtgcatccc 302
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 445 ttccaaagtgttgatcttggaaccc---ggaaagtgtgagatggatctgaagcgcatccc 501
Query: 303 agattagtgg 312
||||||||||
Sbjct: 502 agattagtgg 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space: 213712
Effective search space used: 213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_g13.g1 MSMg01no309_g13.g1 CHROMAT_FILE:
MSMg01no309_g13.g1 PHD_FILE: MSMg01no309_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:59 2005
(574 letters)
>mm_chr1_91028361_91029334
Length = 974
Score = 1048 bits (542), Expect = 0.0
Identities = 566/574 (98%)
Strand = Plus / Minus
Query: 1 ctactatacaaccacgatgatgggtctgagatatttcataggcacctcgaacgatctttt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 774 ctactatacaaccacgatgatgggtctgagatatttcataggcaccttgaacgatctttt 715
Query: 61 acggaaccaggaggttggtgtgacttgatgacacccagcacactgaacttgggaaaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 acggaaccaggaggttggtgtgacttgatgacacccagcacactgaacttgggaaaccca 655
Query: 121 ccctgttgattctcacggacagactgcccgggcgagcatctcagaagtacccagacatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ccctgttgattctcacggacagactgcccgggcgagcatctcagaagtacccagacatcc 595
Query: 181 agctgagcgaaagaagattgccacatttctccaaaagaacgattccacttctcagtctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agctgagcgaaagaagattgccacatttctccaaaagaacgattccacttctcagtctcc 535
Query: 241 agccatcctttctccagggtgggttgcctaccctttaggtcactctcactgacaggggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agccatcctttctccagggtgggttgcctaccctttaggtcactctcactgacaggggca 475
Query: 301 ggcaataaatagctccactccaatgttccagatggtgcctacccatggaagcatccctct 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 474 ggcaataaatagctccactccaatgttccagatggtgcctaggtatggaagcatccctct 415
Query: 361 ctgggtccagaaagctgcggtgggttttactcctctaactactgagttttccttttctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgggtccagaaagctgcggtgggttttactcctctaactactgagttttccttttctga 355
Query: 421 gggtcagggctaacttgtttagagacaagaccctgggagttaggaggctggcaagcactc 480
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 354 gggtcagggctgacttgtttagagacaagaccccgggagttaggaggctggcaagcactc 295
Query: 481 tacacagatagacctgctgacagatcctgctggctgcctcaggccctccgtgccctccct 540
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 294 tacacagacagacctgctgacagatcctgctggctgcctcaggccctccgcgccctccct 235
Query: 541 gctgctgccagcttgttctctctgcacctcccag 574
||||||||||||||||||||||||||||||||||
Sbjct: 234 gctgctgccagcttgttctctctgcacctcccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
