BAC Information

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BAC

Clone NameMSMg01-309K07
Chromosome1 (Build37)
Map Location 93,558,181 - 93,721,860
singlet/doubletdoublet
Overlap geneTwist2
Upstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
Downstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309K07.T7 (MSMg01no309_k07.b1)MSMg01-309K07.TJ (MSMg01no309_k07.g1)
ACCAG433369AG433370
length706736
length of high quality
(start - end)
322 (4 - 325)424 (131 - 554)
definitionCHROMAT_FILE: MSMg01no309_k07.b1 PHD_FILE: MSMg01no309_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:17 2005CHROMAT_FILE: MSMg01no309_k07.g1 PHD_FILE: MSMg01no309_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,721,548 - 93,721,860)(93,558,181 - 93,558,601)
sequence
GAGGATCCGCGGAATTCATCGCACGCTCTTTAGCACATTTTGCCAAAGTG
TGTTACAAACTTTGTAAATATATCAATGTTAAACTACCTTTTTGTCCCAT
ACAGAAACCCTCTTATTTCCCCGATGATGATATATTCTTTAGAAAGATTA
GTACATTTCTTTTTCTTGCAAATGACCTAGAATTTAAACTTCTGAAGAAG
TTGATTTCTCTTGCTTCTGTCAGGTTCCTTGCTGGCCTCGGGAGAAGCCA
AAGTGAATGCTCTTGTGGGCCCACAGGCTTCTCTTTCTCCTGATGTAGCT
TCTGCTATGTTGACACATCATAGGTTTTTCTTTTGCCTCTGCACCCGCTG
CTGAAACCCAGTTCTGTCTAATAGCGGTGCACCCGGGATAGAGGAATCAG
GACTCTCCTAGACGCAGGTTCTCCCAGGTGGATGTCTCTACCATCCATGA
AGTTCCTGCTTACCATCTGCTCAGGCTTTATGCATCTTATGCATGCATGT
ATGCATGTATGTATGTATGCAATGCATGTATGTTTGCCCTTTTTCCCCAC
ATCCCTCCTTTTTATACCCATAATTTTATCCCTCTCTCCTCTTTTTTTCC
CTCCTCTTTCCTTTTTTCCTTTCCTTCCCCTCCTCTCCTTTCTTTTTTCT
TTTTTCTACTTCTTCTTTTTTCCACTAGTATCTTTTTCCCCACCTTATTA
TCTTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTCAAATCCTTCGCCTTCAATT
CCTACGCAATACTGAGGTCCTCTGGGCCGGGGGATCAAACGGGCATGTTG
AAGATATCAACCAGTAGGAGACGACTTTGGGGAAGTTTTTAAGTAAATGC
CTTCAGATGGTCATGAGATGATGCAGATGCTCAGACTTTCCATGGCTGCG
GCCTTGACCACTGCTGTCTGCACACATGTGATAAAGACTTTGTTTTGTCT
TGCTTGTTTATTCTACAGAGCTGGGATTTGCAAATGTGGCTATGCCTCTA
GAAAAAGGGGATTTAAGAGATCTATAAATAAGTCCATTTCACAAAAATAT
GAATGTAATTTGTTTTTGATTTTATAATTCTCATTATAGACAGAAAAGAG
CTCATGGACAGTAAGTGTATGTAAGCTGGGAAGTCTTAAGTAATTCTTTG
TTGAGAGAAGGAATGAGACGCAACTCTGGCTTTAAAGTCTGGGCCTTCTA
TGATTTCACTGTANAAGTTGGAGGTTGCCAGTTTCTCCGTCTACGAACCC
CTGTCTCTGGGTGTTAGCATTGGGTAATTTATTTCAACTGTGGCTCATAT
TCATGGTTCTAACAACTCATTTTGGGCCTATTGCACTTTTCTAGAAAAGT
ACTGATTGATTTAGGGTTTTCAAATATATAAATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_k07.b1 MSMg01no309_k07.b1 CHROMAT_FILE:
MSMg01no309_k07.b1 PHD_FILE: MSMg01no309_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:17 2005
         (322 letters)



>mm_chr1_93721340_93722061
          Length = 722

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcatcgcacgctctttagcacattttgccaaagtgtgttacaaactttgtaaatat 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcatcgcacgctctttagcacattttgccaaagtgtgttacaaactttgtaaatat 462

                                                                       
Query: 69  atcaatgttaaactacctttttgtcccatacagaaaccctcttatttccccgatgatgat 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 461 atcaatgttaaactacctttttgtcccatacagaaaccctcttatttccccgacgatgat 402

                                                                       
Query: 129 atattctttagaaagattagtacatttctttttcttgcaaatgacctagaatttaaactt 188
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 401 atattctttagaaagattagtacatttctttttcttgcaaatgacctagaattttaactt 342

                                                                       
Query: 189 ctgaagaagttgatttctcttgcttctgtcaggttccttgctggcctcgggagaagccaa 248
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 341 ctgaagaagttgatttctcttgcttctgtcaggtcccttgctggcctcgggagaagccaa 282

                                                                       
Query: 249 agtgaatgctcttgtgggcccacaggcttctctttctcctgatgtagcttctgctatgtt 308
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 281 agtgaaggctcttgtgggcccacaggcttctctttcttctgatgtagcttctgctatgtt 222

                        
Query: 309 gacacatcatagg 321
           |||||||||||||
Sbjct: 221 gacacatcatagg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no309_k07.g1 MSMg01no309_k07.g1 CHROMAT_FILE:
MSMg01no309_k07.g1 PHD_FILE: MSMg01no309_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:17 2005
         (424 letters)



>mm_chr1_93557978_93558801
          Length = 824

 Score =  775 bits (401), Expect = 0.0
 Identities = 416/421 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   atcaaacgggcatgttgaagatatcaaccagtaggagacgactttggggaagtttttaag 63
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 atcaaatgggcatgttgaagatatcagccagtaggagacgactttggggaagtttttaag 263

                                                                       
Query: 64  taaatgccttcagatggtcatgagatgatgcagatgctcagactttccatggctgcggcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaatgccttcagatggtcatgagatgatgcagatgctcagactttccatggctgcggcc 323

                                                                       
Query: 124 ttgaccactgctgtctgcacacatgtgataaagactttgttttgtcttgcttgtttattc 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 ttgaccactgctgtctgcacacatgtgataaagagtttgttttgtcttgcttgtttattc 383

                                                                       
Query: 184 tacagagctgggatttgcaaatgtggctatgcctctagaaaaaggggatttaagagatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacagagctgggatttgcaaatgtggctatgcctctagaaaaaggggatttaagagatct 443

                                                                       
Query: 244 ataaataagtccatttcacaaaaatatgaatgtaatttgtttttgattttataattctca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaataagtccatttcacaaaaatatgaatgtaatttgtttttgattttataattctca 503

                                                                       
Query: 304 ttatagacagaaaagagctcatggacagtaagtgtatgtaagctgggaagtcttaagtaa 363
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttatagacagcaaagagctcatggacagtaagtgtatgtaagctgggaagtcttaagtaa 563

                                                                       
Query: 364 ttctttgttgagagaaggaatgagacgcaactctggctttaaagtctgggccttctatga 423
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 ttctttgttgagagaaggaatgagacacaactctggctttaaagtctgggccttctatga 623

            
Query: 424 t 424
           |
Sbjct: 624 t 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)