Query= MSMg01no309_o08.b1 MSMg01no309_o08.b1 CHROMAT_FILE:
MSMg01no309_o08.b1 PHD_FILE: MSMg01no309_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:36 2005
(314 letters)
>mm_chr1_76622218_76622933
Length = 716
Score = 592 bits (306), Expect = e-173
Identities = 310/312 (99%), Gaps = 2/312 (0%)
Strand = Plus / Minus
Query: 5 gaattctccaaaaagtaatgcaggtgtctaggtcaaatgcaaataaagggatatgcaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctccaaaaagtaatgcaggtgtctaggtcaaatgcaaataaagggatatgcaaat 457
Query: 65 tgagatatacttgactacaaaatcagatgcttaaaaacatttcaggaaagtgaagttttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgagatatacttgactacaaaatcagatgcttaaaaacatttcaggaaagtgaagttttc 397
Query: 125 gtctcacaaaattcacccggtcctcattataatacgtttcccatttgtgccattcattca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtctcacaaaattcacccggtcctcattataatacgtttcccatttgtgccattcattca 337
Query: 185 gcacactaaatgcatgatggggctccagttaagtagatttagaagctgattatactgcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcacactaaatgcatgatggggctccagttaagtagatttagaagctgattatactgcat 277
Query: 245 taaatgtattcacttcaattttagcagga--ttttttcccttaaaaggattacaagacca 302
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 276 taaatgtattcacttcaattttagcaggattttttttcccttaaaaggattacaagacca 217
Query: 303 aaaaagtagaaa 314
||||||||||||
Sbjct: 216 aaaaagtagaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 716
Length adjustment: 9
Effective length of query: 305
Effective length of database: 707
Effective search space: 215635
Effective search space used: 215635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_o08.g1 MSMg01no309_o08.g1 CHROMAT_FILE:
MSMg01no309_o08.g1 PHD_FILE: MSMg01no309_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:36 2005
(545 letters)
>mm_chr1_76428354_76429298
Length = 945
Score = 953 bits (493), Expect = 0.0
Identities = 531/549 (96%), Gaps = 11/549 (2%)
Strand = Plus / Plus
Query: 1 tctgaatggtgactattagtgcaggaccacaggggcatgggagctgggcggaaagaaata 60
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tctgaatggtgattattagtgcaggaccacaggggcatgggagctgggtggaaagaaata 260
Query: 61 aggtgtacttccagagataggacataatgagccagacttgggctcttcactggatagatt 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgtacttccagagataggagataatgagccagacttgggctcttcactggatagatt 320
Query: 121 taattgtcaagttgacacaatctagaatcaatggggagtgtcttatgaaaaattctctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattgtcaagttgacacaatctagaatcaatggggagtgtcttatgaaaaattctctag 380
Query: 181 atcaggttggtctctgggcatttctttttttaaaaaaaatttt----attagataatttt 236
||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 381 atcaggttggtctctgggcatttcttttt------aaaattttttttattagata-tttt 433
Query: 237 tttatttatattccaaatgttattccctttcctggttttccctctaaaaccccctagcct 296
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 434 tttatttatattccaaatgttattccctttcctggtttcccctctaaaaccccctatcct 493
Query: 297 tttccctctccccctgctcaacaaccctgcttcctcactcactcctgctccctggccctg 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 494 tttccctctccccctgctcaacaaccctgcttcctcactcactcctgcttcctggccctg 553
Query: 357 gaattaccctttactggggtgtagaaccttcacaggaccaagggcctctcctcccattga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaattaccctttactggggtgtagaaccttcacaggaccaagggcctctcctcccattga 613
Query: 417 tgaccaactaggccatcctctactacatattcagctagagccatgagtcctaccatgtgt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgaccaactaggccatcctctactacatattcagctagagccatgagtcctaccatgtgt 673
Query: 477 cttctttggttggtggtttagtattagggagctctgagggtactggttagttcatattgt 536
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 674 cttctttggttggtggtttagtatcagggagctctgagggtactggttagttcatattgt 733
Query: 537 tggactgca 545
|||||||||
Sbjct: 734 tggactgca 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
