BAC Information

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BAC

Clone NameMSMg01-311B20
Chromosome1 (Build37)
Map Location 142,364,618 - 142,364,840
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneAspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311B20.T7 (MSMg01no311_b20.b1)MSMg01-311B20.TJ (MSMg01no311_b20.g1)
ACCAG433708AG433709
length752760
length of high quality
(start - end)
320 (51 - 370)226 (136 - 361)
definitionCHROMAT_FILE: MSMg01no311_b20.b1 PHD_FILE: MSMg01no311_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:52 2005CHROMAT_FILE: MSMg01no311_b20.g1 PHD_FILE: MSMg01no311_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTATACCCATTTTTTTGCCCTCAGCTTCCTGATATGATTT
ATTAATATAAGAATTGCTAGTGAGTAGCTATGTATTCTGAAATTTTATGG
TTGATATGACTCAATTTTATTAAAAAATGTTTAGATTTGCGATTCTTTTA
AGATTCTTACAAGGTTACTTTTAAAGATAAAGAAAATAATTACTCCTTTC
TTTGTAACAGCAAATTGTTGCCTGCCAGTAAGAGAAACTGGCTGAGAAAA
CTACCTTGCATGCTTACACCTAGTTAACCTGTTTTGTTGCTTGGTTTCGA
ATGCACCTGGGATTTGGTTTTAAATGANTTTATGGCCCGGCCCCTAATTT
GTTTTGTTTTGNTTTNCNTGGGCCCCCCCCTAAAAATTTATTTAAAACTG
GGGCCGCCCGGGGTGTGTTTTCTTGATCTTTTACTATAAGAAAACTAACA
TGCAACCCCGCTGCAATTGTACAATGCTTGACAGATTTCCCTGTTTTTTA
TACGCTATGTACCACCGTATAATTATTGCTCGGTTTGTAACCCCGTTCCT
CTTATCCATTAATTACGCGCTTACTTTGGTCGTACACACTTTTTGCTACA
TCGCTTTCTTTCAGCCTTCCTTTTGCATTTTTCTCTCCCCAGTATTTACT
TTACTGTCCCCTTTCCCCCATATTTTTCCTATTATATTTTCCCCTTCTCT
CG
NATTCAATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAACTTGAAAGACACTGAC
TGAAAGGATTAAAAAAAAAAAAACAAATACCCCGTATCTTCTTTACATAA
TGAAAATGTATAAGCTCGGATCAGAGCATATTCCACCCATAATCTATTTA
CTTAAAAAAAACATATATATACTTTTACTTATGCATGAATAAGCACAATC
TTTTTAATTGGTTATTTTATTTATTTATTTATATATCAAATATTGTCCAC
CTTCCCTATTTCCCCTCTGCAAACCTCCTATTTTATCTCCCTCCAGCTTA
CCACCCAGGACCCCACTATTGGGGTAGATCTAAAACAAAGGCCCGGTTTT
TTTTTGTGATTGAGGNNNGNNTTTCCCCCAAAACTTCTATNTTAAAGGGG
TTCTCGTTTCGGGTCCCTTCCTTCCTCCCCCTTTTTCCTCTTGCTCGTTT
TTTCCCTCTGTCCCCCCCTTCCTCTTTCCCTCCCCTCTTTCTTCTTCCTT
TCCTCTCCCTCTCCCTTTCTTTCCTCTCCTCTTCTTTCTCCTTTTTCTCC
TCTTTCCCCTTTTCCTTTCCCCCTCCTTTTTTCCTCCTTCTTTTTTCCCT
CCTCTTCTTTTTTCGTCCCCTCTTTTTTTTTTTTCTCTTTCTTTGGTCGC
CTTTCTCCTTTTTCTTTTTCGCTTTTTCGCCCCCTGTTCGCTTTTTCTTT
CCTTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_b20.g1 MSMg01no311_b20.g1 CHROMAT_FILE:
MSMg01no311_b20.g1 PHD_FILE: MSMg01no311_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:53 2005
         (226 letters)



>mm_chr1_142364418_142365043
          Length = 626

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttctttacataatgaaaatgtataagctcggatcagagcatattccacccataatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttctttacataatgaaaatgtataagctcggatcagagcatattccacccataatct 260

                                                                       
Query: 61  atttacttaaaaaaaacatatatatacttttacttatgcatgaataagcacaatcttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttacttaaaaaaaacatatatatacttttacttatgcatgaataagcacaatcttttt 320

                                                                       
Query: 121 aattggttattttatttatttatttatatatcaaatattgtccaccttccctatttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattggttattttatttatttatttatatatcaaatattgtccaccttccctatttcccc 380

                                                      
Query: 181 tctgcaaacctcctattttatctccctccagcttaccacccag 223
           ||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 381 tctgcaaacctcctatcccatctccctccagcttaccacccag 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)