BAC Information

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BAC

Clone NameMSMg01-311C05
Chromosome1 (Build37)
Map Location 57,955,277 - 58,115,215
singlet/doubletdoublet
Overlap gene2810022L02Rik, Kctd18, Sgol2, Aox1
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream geneAox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311C05.T7 (MSMg01no311_c05.b1)MSMg01-311C05.TJ (MSMg01no311_c05.g1)
ACCAG433724AG433725
length734736
length of high quality
(start - end)
239 (130 - 368)347 (75 - 421)
definitionCHROMAT_FILE: MSMg01no311_c05.b1 PHD_FILE: MSMg01no311_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:54 2005CHROMAT_FILE: MSMg01no311_c05.g1 PHD_FILE: MSMg01no311_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,955,277 - 57,955,513)(58,114,869 - 58,115,215)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAGTTTCATCATATTTAGAGACACATCTACTAGCCAGTGTGAAA
ATATATGCAAGTGGCCTTTGATAATCTCTAAATACCTCCAATGTTCAATG
ATTCTTCCAATGATGATTTTTTTTCAGAAGGCAAAAATATTGCTATTCAA
ATTTCTCAATAAATATTTGTGAGATGAGTAGTGGAATGAATCAGTAGCTC
ACACATTATTCTCTGACACGCAGACAAAATATTTTTAGCTCCCAGGTTAA
TGAGCTCATGTTTATATACATGCTTGTCTCCTGCTTAAAATTCATTTGTA
TCCTAACTGAATAATCTTCTGTTCTTCTACCCCACCCCATTATTTCCATT
AGGCTATCCATCCCCATATGCGCCCCCCCGCAACTAAATTACTATGCCAT
GCTGGATTTACAATTCTGAGTTAATCGCTCATCAAGACTGAATTTCACCT
GTGATTTAGGAAGGGAACGAGTTGCAACCAGTTTGGATTTAGTCATTGTT
TCAACACAGGCGTTTATAAATTCATCATCAGGTGTTTCTGCCATCTCCAC
GCCATTACAGCCACCTGGGATGCATAGCGCTGGGTCCACTGTTGGCTCAA
AATCCTGTAAAAATCTGCTCAGGTTCTTGCTACCCACGGAGAGTCATCTT
TACTATTAAATCTGGCAAACTCTTTCAACCTTTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTGGACTCCCTCCAGATCTTCAC
CACACTGTCTGTAGAGAAGCCGTGAACTGTGACTAGAAACGACTCTCGCC
TGTTGCTCTGTCGGACTAAACAGCTAACTTGATGAGCGCATTTCCATAGG
AAAAGAAATCTAAGAACTCACCATCCCTGGCCTGGCTTATGACACCCAGC
TCTTCAATTCTGTCAGGAGAAATTATGATGGGGTGGAAGACACCTTTAAA
CTTTACTTCAGGTCCTAAGGGATTGTGGTAGAGACACAAGATTAGAACAA
AAAGACACAAATGACTCTCTACTTTGAATTATGACTAAACGAATGTCTTT
GCACATAAGGAAGTTGTTTCCCCCCCCCGGTCTGTTTATTGCAAACCACA
AGCAGAGATATTTAGGGAGCCTTTGGAATTGTTAGCTCTAAAACGCGTGT
GATACGGAACACTCAGATTCGCTTGGAGCAGATCCTGAAGGCCCTGCGAA
GAGATGGGCAGCCACGCCAGGCCTATGTGGGAAAGGTGAAGGCTCCAAAA
CTGCTGTCTCTATAAAATATGCCAGAGCCACTGAGAAGCCCTTCCAAGAG
GAAAGACCGAGCAGTTTCTGGACAAGAGCCAGTGTGGTACCCAAATGAAA
AGCCAGGATACCTGTACCCTGATGCTGTTTTACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_c05.b1 MSMg01no311_c05.b1 CHROMAT_FILE:
MSMg01no311_c05.b1 PHD_FILE: MSMg01no311_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:54 2005
         (239 letters)



>mm_chr1_57955077_57955715
          Length = 639

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatacctccaatgttcaatgattcttccaatgatgattttttttcagaaggcaaaaata 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatacctccagtgttcaatgattcttccaatgatgattttttttcagaaggcaaaaata 260

                                                                       
Query: 61  ttgctattcaaatttctcaataaatatttgtgagatgagtagtggaatgaatcagtagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctattcaaatttctcaataaatatttgtgagatgagtagtggaatgaatcagtagct 320

                                                                       
Query: 121 cacacattattctctgacacgcagacaaaatatttttagctcccaggttaatgagctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacattattctctgacacgcagacaaaatatttttagctcccaggttaatgagctcat 380

                                                                    
Query: 181 gtttatatacatgcttgtctcctgcttaaaattcatttgtatcctaactgaataatc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttatatacatgcttgtctcctgcttaaaattcatttgtatcctaactgaataatc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no311_c05.g1 MSMg01no311_c05.g1 CHROMAT_FILE:
MSMg01no311_c05.g1 PHD_FILE: MSMg01no311_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:54 2005
         (347 letters)



>mm_chr1_58114669_58115415
          Length = 747

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctggactccctccagatcttcaccacactgtctgtagagaagccgtgaactgtgact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 547 ttcctggactccctccagatcttcaccacactgtctgtagagaagccgtgaattgtgact 488

                                                                       
Query: 61  agaaacgactctcgcctgttgctctgtcggactaaacagctaacttgatgagcgcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agaaacgactctcgcctgttgctctgtcggactaaacagctaacttgatgagcgcatttc 428

                                                                       
Query: 121 cataggaaaagaaatctaagaactcaccatccctggcctggcttatgacacccagctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cataggaaaagaaatctaagaactcaccatccctggcctggcttatgacacccagctctt 368

                                                                       
Query: 181 caattctgtcaggagaaattatgatggggtggaagacacctttaaactttacttcaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caattctgtcaggagaaattatgatggggtggaagacacctttaaactttacttcaggtc 308

                                                                       
Query: 241 ctaagggattgtggtagagacacaagattagaacaaaaagacacaaatgactctctactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctaagggattgtggtagagacacaagattagaacaaaaagacacaaatgactctctactt 248

                                                          
Query: 301 tgaattatgactaaacgaatgtctttgcacataaggaagttgtttcc 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgaattatgactaaacgaatgtctttgcacataaggaagttgtttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)