Query= MSMg01no311_f02.b1 MSMg01no311_f02.b1 CHROMAT_FILE:
MSMg01no311_f02.b1 PHD_FILE: MSMg01no311_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:08 2005
(316 letters)
>mm_chr1_71474110_71474830
Length = 721
Score = 551 bits (285), Expect = e-161
Identities = 306/317 (96%), Gaps = 9/317 (2%)
Strand = Plus / Plus
Query: 5 gaattcactgatgggtctttgtagtggaaatatcttggaat--a---tcattatttggca 59
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 205 gaattcactgatgggtctttgtagtggaaatatcttggaatttagcctcattatttggca 264
Query: 60 caaatatgtccaatggcctcagccatttagagatgagttaaataccaaagtgaatggcat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaatatgtccaatggcctcagccatttagagatgagttaaataccaaagtgaatggcat 324
Query: 120 ttcagaaaccctgaacccatacatgattagtgattacgtcatcatgcatgatagcatcat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcagaaaccctgaacccatacatgattagtgattacgtcatcatgcatgatagcatcat 384
Query: 180 ctctaaccagaattgcactgtgggtgacatgaataaagcaagttctatgaatttttatta 239
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 ctctaaccagaattgcactgtgggtgacatgaataaggcaagttctatgaatttttattt 444
Query: 240 ttgactgtattgttcttattaaatattgataaaattaaagaaagattgaaataaaaacct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgactgtattgttcttattaaatattgataaaattaaagaaagattgaaataaaaacct 504
Query: 300 gtctgtctgtgtacttg 316
|||||| |||||||
Sbjct: 505 gtctgt----gtacttg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 721
Length adjustment: 9
Effective length of query: 307
Effective length of database: 712
Effective search space: 218584
Effective search space used: 218584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_f02.g1 MSMg01no311_f02.g1 CHROMAT_FILE:
MSMg01no311_f02.g1 PHD_FILE: MSMg01no311_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:08 2005
(283 letters)
>mm_chr1_71589110_71589792
Length = 683
Score = 526 bits (272), Expect = e-154
Identities = 278/280 (99%)
Strand = Plus / Minus
Query: 1 agtaggactgctttgtatagttgcgattcctggacctcaatgtatacagatcaaacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 653 agtaggactgctttgtatagttgcgattcctggacctcaatgtatacagatcaaataaaa 594
Query: 61 atgcagtaggcttcttatctgtttcatgctcggagacactacggtggattagccagaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atgcagtaggcttcttatctgtttcatgctcggagacactacggtggattagccagaacc 534
Query: 121 aaaggttcatacatgtcacaacataattaataataaatattaaaaaattaaaagataaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaaggttcatacatgtcacaacataattaataataaatattaaaaaattaaaagataaac 474
Query: 181 ttcaattctgcttcatacaaactcactttgagattcttttctttagtgaagtcaaaatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttcaattctgcttcatacaaactcactttgagattcttttctttagtgaagtcaaaatcc 414
Query: 241 gggcttcatctgaacagaagtctctggaataagtaacacc 280
|||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggcttcatctgaacagaagtctctggaataagtaacacc 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
