BAC Information

Click to search

BAC

Clone NameMSMg01-311L09
Chromosome1 (Build37)
Map Location 84,089,153 - 84,089,308
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311L09.T7 (MSMg01no311_l09.b1)MSMg01-311L09.TJ (MSMg01no311_l09.g1)
ACCAG434133AG434134
length754782
length of high quality
(start - end)
317 (45 - 361)158 (78 - 235)
definitionCHROMAT_FILE: MSMg01no311_l09.b1 PHD_FILE: MSMg01no311_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:38 2005CHROMAT_FILE: MSMg01no311_l09.g1 PHD_FILE: MSMg01no311_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCAGAAGACTGAAAGTCACTGCAGATTTAGCTGCCTCCTGAACA
AGACAGATTGCATACACCAGCAAGATTTTGCTGAAAGGACCCTTATATAG
CTGTCTCTTGTGAGACCATGCCAGGGCCTAGCAAACACAGAAGTGGATGC
TCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGTAGGAGCTAGA
GAAAGTACCCAAGAAGCTATAGGGGTCTGCAACCCTATAGGTGGAACAAC
AATATGAACTAACCAGTACACCCCCAGAGCTCATGTCTCTACCTGCATAT
GCATCAGAAGATGTTCTATTTGCTCACCACCCCCCAGAGAGGCCCATTGG
TCGTGCAAACTTTATCTCCCCCCCCACAAAAAAATGACAGGGCCAAGAAG
TGGGAGGGCCTGAGGTTACCATCCCCTCTATTCTATCTTTCTACCTACTC
ATCTCCTCTTCTTTACCCTTCTCTCCCTTTTCCTTTTATTTCTCCTCCTC
ATCACTTTCTTCCCTCTATTCCTCTCCCATCCTTCCTCCCTTTATCTATT
CTTCTTCTACCTTTTCTATATAACCTTATTTTTAATCAACTTCTTTTCCA
TTCCATTTCTTATCTTTTCTCTCCTCCTTCCTTATTTTTTTATTTTTCAC
TTCCTCCGCACGATCTATACCCTATTTTTCCTATCATCCCCTTTTCCTTA
CCTG
TCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGCACACTGAGATTTTTTA
ATAGAAGAGACCATCTAGGTGTTTAGAGAATCTCAGATCTGCATCTATAT
GAGTGGGATTAGGGGTTGAGTTCCGTACTAACAGGTAGAAGAGAAGAGAG
TCTGCGATGCGTTCATATTTGCATATTATTGAATTATCGCCTGGCTCAGA
GGCAAGAACAGACCAATTGTGCATTGGTTGTACTGTACACCTGCACTCTT
GTTGTGAGTGAGTAGCCTGGGAGGCTTTATCCTCTGCGGGTACATGCTTG
GGGTCATTTACAGGTTTTTTTTTTTTTCCCCCCCCCCCCCATTTGATTTC
CTGGAAATATATTTGATTTCCCCCCCCTCTTTAAAAGAAAAATGATTTGG
GGGTGGGGGTGGCGACGCATAGTAATCACATTTTTTGTCCGTTTCTTGGT
GTTTTGCTATCGTTAAACTCCGATCCTTTTGATCTTTGACTTTTCTCTAT
GTTACTTGCCCATTTTCTTACTTGCTCCTTTCTTGTTTCACTTTCTTCTC
ATTTACTCCCTTTCTCCTCTTGGGTTTTACTTCTTCTTATGTTTCCCCCA
TTTTCTCCCTTTCTCTTTCATCCTTTTTTTGCGTTACCTCTCCTTTGTCT
TGTTTTTTTCCTTCTTCTTCTTCTCACCTCCCCTTTTTTTCCGGTTTTCA
TAACTTCCTTGTCCCGCTTGTACTCTTTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_l09.g1 MSMg01no311_l09.g1 CHROMAT_FILE:
MSMg01no311_l09.g1 PHD_FILE: MSMg01no311_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:38 2005
         (158 letters)



>mm_chr1_84088950_84089508
          Length = 559

 Score =  248 bits (128), Expect = 2e-70
 Identities = 149/156 (95%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctgcacactgaga-ttttttaatagaagagaccatctaggtgtttagagaatctcagatc 62
           ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 359 ctgcacactgagatttttttaatagaagagaccatctaggggtctagagaatctcagatc 300

                                                                       
Query: 63  tgcatctatatgagtgggattaggggttgagttccgtactaacaggtagaagagaagaga 122
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 299 tgcatctatatgagtgggattaggggttgagttccgtacaaacaggtagaagaaaagaga 240

                                               
Query: 123 gtctgcgatgcgttcatatttgcatattattgaatt 158
           ||||| ||||||||||| ||||||||||||||||||
Sbjct: 239 gtctgtgatgcgttcatgtttgcatattattgaatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 559
Length adjustment: 8
Effective length of query: 150
Effective length of database: 551
Effective search space:    82650
Effective search space used:    82650
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)