Query= MSMg01no311_m08.b1 MSMg01no311_m08.b1 CHROMAT_FILE:
MSMg01no311_m08.b1 PHD_FILE: MSMg01no311_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:43 2005
(575 letters)
>mm_chr1_126261653_126262627
Length = 975
Score = 1060 bits (548), Expect = 0.0
Identities = 566/572 (98%)
Strand = Plus / Minus
Query: 4 ggaattcagaatttttacatgtaattatacacaagagtttttgactctctgatactatgg 63
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 775 ggaattcagaatttttacatgtaattatacacaagagtttctgactctctgatactatgg 716
Query: 64 aaaccatgatggaagatactaaaatcatgctctgtttatcaattatatttccatattaag 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aaaccatgatgggagatactaaaatcatgctctgtttatcaattatatttccatattaag 656
Query: 124 gacccctgggttcatccagcaggagagaatgctgcttcactgtgggagtcttagaaacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gacccctgggttcatccagcaggagagaatgctgcttcactgtgggagtcttagaaacag 596
Query: 184 ggtgacacattacattctgaatatgtgacttatccattctaattggtctgaaaatgacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggtgacacattacattctgaatatgtgacttatccattctaattggtctgaaaatgacag 536
Query: 244 ttgtgcagaaatctcaaggtcagggggctgttttatttacagatgcatcaagcttcttga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttgtgcagaaatctcaaggtcagggggctgttttatttacagatgcatcaagcttcttga 476
Query: 304 ttctttaagcagaatgaaaataataagtaattgctgccggacttctgagctgaaaaggtg 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 475 ttctttaagcagaatgaaaataataagtaattgctgctggacttctgagctgaaaaggtg 416
Query: 364 agacaaatgcacccataaatctacaacaaacctgactgtatattaatggtctctctacac 423
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agacaaatgcacaaataaatctacaacaaacctgactgtatattaatggtctctctacac 356
Query: 424 attagggcttaagaggcagcactccatactgggaaaggtatcttaatccatttgttgcta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 attagggcttaagaggcagcactccatactgggaaaggtatcttaatccatttgttgcta 296
Query: 484 tttaattccacgtgctgtaaaaggttcatttatcatttatattaatattccagtgaggag 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tttaattccacatgctgtaaaaggttcatttatcatttatattaatattccagtgaggag 236
Query: 544 gagagttctgtcccagctagtgattccatttg 575
||||||||||||||||||||||||||||||||
Sbjct: 235 gagagttctgtcccagctagtgattccatttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_m08.g1 MSMg01no311_m08.g1 CHROMAT_FILE:
MSMg01no311_m08.g1 PHD_FILE: MSMg01no311_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:43 2005
(288 letters)
>mm_chr1_126192779_126193463
Length = 685
Score = 526 bits (272), Expect = e-154
Identities = 283/288 (98%), Gaps = 3/288 (1%)
Strand = Plus / Plus
Query: 1 catagtgtgctttggaaggaatttcagatttgtgttaaaatgcgtgtatacaacacatgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 catagtgtgctttggaaggaatttcagatttgtgttaaaatgcgtgtataaaacacatgg 260
Query: 61 tatctgaagtaccctctgtaaaaagtcatgtatgtatatttcaaatagtgtatttcagat 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tatctgaagtaccctctgtaaaaagtcatgtatgtatatttcaagtagtgtatttcagat 320
Query: 121 aataatggtgttcctttgaggcacttggcccaattttcaaaaaattgctaacctgtgcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataatggtgttcctttgaggcacttggcccaattttcaaaaaattgctaacctgtgcgg 380
Query: 181 cggctttttcttgaaaccttcaaagcttcccccaaggaggccaaaattcttcctttaaat 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 c---tttttcttgaaaccttcaaagcttcccccaaggaggccaaaattcttcctttaaat 437
Query: 241 taacaatcttcgtccttgcttcaacatgtatatcaaaccagaaaagac 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 taacaatcttcgtccttgcttcaacatgtatatcaaaccagaaaagac 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 685
Length adjustment: 9
Effective length of query: 279
Effective length of database: 676
Effective search space: 188604
Effective search space used: 188604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
