BAC Information

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BAC

Clone NameMSMg01-312D18
Chromosome1 (Build37)
Map Location 188,786,192 - 188,786,433
singlet/doubletsinglet
Overlap genenone
Upstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375
Downstream geneD1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D18.T7 (MSMg01no312_d18.b1)MSMg01-312D18.TJ (MSMg01no312_d18.g1)
ACCAG434509AG434510
length785721
length of high quality
(start - end)
276 (43 - 318)285 (70 - 354)
definitionCHROMAT_FILE: MSMg01no312_d18.b1 PHD_FILE: MSMg01no312_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:16 2005CHROMAT_FILE: MSMg01no312_d18.g1 PHD_FILE: MSMg01no312_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGTACCCCATTTTTAAATAGGGTTATTTGGTTTTCT
GAAATCCAACTTCTTGTTATACACACACATATATATATATATATATAATA
TTAACCACCTATTGGATTTAGGATGGGTAAAGATCTCTTCCCAATCTTGT
TGACAGTGTTCTTTGCCTTATAGAAGCTTTGCAATTTTATGAGGTCCCAT
TTCTCAATTCCTGATTTTACAGCATAAGCCATTGCTATTTTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCCGGGCTTTTCCCTCTATAAGTTTCAA
TGTCTTTTTTTTTTTATGTGCCACCCCCCTCCTNCCACTTAGACCTTGAA
GAAAAAGAGTGGATCAATTTCCCCCCCCTACTAAATAAAACAANNNNGGG
CCGCCGCGGGGTGTCTTGGATTACCTCCCCCNAAATAAAAANATTAAATT
NNNAAGAATTTTAAGTTCCCTTTTTTCAAAAAATCAAAGTGGCCCTTNAG
GTGGGGGGGGGGTATCATTTTTTGGGGCCCCTTATGACCCTTTTTCACTT
GGATTATTATGGATAGCGGCTTTTTTTCCCTATTTCCTCTGCAATATTTG
TGATAAACAATTACCTTTTTCTGTATCTTATAATATTTCGATCCTATTTT
CCTCGGGTTTTTTTCCCCATAAAAATACATCCTTTTTTCTATCTTATTAT
ATTCCNCCCCTTTTTTTTTATTTTTTTTCCGTCTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCACTTAGGTCCTTGTCACTGACTCTCATGA
ACTACAGCACTATCTACTTGTGGGATTTTGTTTAGTTCTTTAGGTATTTG
TACAGCACAGGCAATAGTCTTCAGGGACCTACATATTAAATGTCTTTATA
TTTTATATATGTGTATAATCTATATATAATATAGAATTTTATATTATCTT
ATATATGATGAAATATCTTAATATGTATAACCTTATATATTATCCTAATA
TTATATGTGTGTGTATAATATATAATCTAAATATAATCCTATATTACATT
TAGGATTCCTTCNTTCTCCCCCCCCCCCTCTCTCTATATATATATATATA
TATATATATACACACCCACAAATAAAAAAAAATGGACGTCGGGGGGGGAG
GATTTCATATATAAGTACTCTGCTGGCTGTGTGTGTGTACAAGCGTGTGT
ACAAACACACACAATACTCATATCAGGACATCTTACATATAATTAGTCTA
TCAAGAATTTGATCCATTAACAGAATAAAAGGGGATCATATGGGGCTACA
TAAATTCTTTATTGCTATTTATGCAAACTGTCAGTTGGCTCACCTAAGAA
CAATTTTTAATCTTCATTTATTTATTCTCTGTTGCTTTTTCTCTTAGATA
TGAAGTATTTTTAAAGAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d18.g1 MSMg01no312_d18.g1 CHROMAT_FILE:
MSMg01no312_d18.g1 PHD_FILE: MSMg01no312_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:16 2005
         (285 letters)



>mm_chr1_188785992_188786676
          Length = 685

 Score =  418 bits (216), Expect = e-121
 Identities = 233/242 (96%), Gaps = 7/242 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacttaggtccttgtcactgactctcatgaactacagcactatctacttgtgggatttt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacttaggtccttgtcactgaatctcatgaactacagcactatctacttgtgggatttt 260

                                                                       
Query: 61  gtttagttctttaggtatttgtacagcacaggcaatagtcttcagggacctacatattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttagttctttaggtatttgtacagcacaggcaatagtcttcagggacctacatattaa 320

                                                                       
Query: 121 atgtctttatattttatatatgtgtataatctatatataatatagaattttatattatct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctttatattttttatatgtgtataatctatatataatatagaattttatattatct 380

                                                                       
Query: 181 tatatatgatgaaatatcttaat-----atgtataaccttatata--ttatcctaatatt 233
           |||||||||||||||||||||||     |||||||||||||||||  |||||||||||||
Sbjct: 381 tatatatgatgaaatatcttaatgttatatgtataaccttatatacattatcctaatatt 440

             
Query: 234 at 235
           ||
Sbjct: 441 at 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)