CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGTCTTCAATCAAAACAATGATTACATGAAATTCACAGTCAA
ATGGATAAAACTTGAATTATCACCCTGAGTGAGGTAACACAGACACAAAA
GAACACACATGGTGAGTACTTATTAATAAGTGGATATTAGCCCTGAAGCT
CACAATGCCCAAGATACAACCCACAGACCATATAGAGAGTAGAAGGAAAG
GAAGACCAGGGTGTGGCTGCTTCAGTACTGCCTTGAGGGATGAATAGGAC
CACTGTGGGAGGTGGAAGGCGATGGAGGCAGGGAAGGAAGCATAAGGGTG
TAAATAGTTTTTCATGATGCTGATTTAATTTTTTCAGGTTGTAAACTCCA
CAAGTAGAATCATTTTTGCAAACTTTTATATACTTTAAACCTCTTAATTT
TAAAAATATTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTTCTATTGGATATTCTCTTTATTGACTAAAAAT
ATTCCTTTAATCATCGAAAAATTCCATACATTTTGAAGTAGAGGCTGTTC
TCCACTCCGTTGCCTGCCTGCCTGTGAATCCCGTTTCCCTAACTGGACTA
CCTTGTCTGGTCTCAGTAGGAGAGGATGTGCCTAGT

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTATCTGAGAAATTCTCTTCCTTTTGTGTTAGAGCTTTTAGG
TGTGCTGTCAAGCTGCTACCGTATGCTCACTCTAGCTTCTTTTTGGAGAC
ACTCAGAGCTATGAGTTTTCCTTTTAGGACTGCTTCCATTGTGTCCCATA
AGTCTGAGTATGTTGTGGCTTCATTTTCATTAAACTCTAAAAAGTCTTTA
ATTTCTTTCTTTATTTCTTCCTTGACCAAGGTATCATTGAGAAGAGTGTT
CTTCAGCTCCACGTGCATGTGGGCTTTCTATTATTTATTTTGTTATTGAA
GATCAACGTTAGTCTGTGGTGATCTCATAGGGTACATGGGAATATTTCAA
TATTTTTGTATCTTCAGAGGTCTGTTTAGTGACCGATTACATGGTCAATT
TTGGAGAAGGTACCATGAGGTGCTGAGAAGAACGTATATCCTATTGTTTT
AGGTTGAAATATTCTATAGATATCTGTTAAATCCATTTCTTTCATAACTT
CTGTTAGTTTCAATGTGTCTCTGCTTAGTTTCTGTTTCCAGAATCTGTCC
ATTGATGAGAGTGGGGTGTTGAAGTCTCCCACTATAATTGTGTGAAGTAT
AATGTGTTCTTTGAGTTTTAGGAAAGTTTCTTTAATGAATGTGGATGCCC
TTGCATTTGGAGCATAGATGTTCAGAATTGAGAGTN

Query= MSMg01no312_e05.b1 MSMg01no312_e05.b1 CHROMAT_FILE:
MSMg01no312_e05.b1 PHD_FILE: MSMg01no312_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:18 2005
         (589 letters)



>mm_chr1_19023892_19024877
          Length = 986

 Score =  891 bits (461), Expect = 0.0
 Identities = 537/589 (91%), Gaps = 43/589 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaggtaacacagacacaaaagaacacacatggtgagtacttattaataagtggatat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgaggtaacaaagacacaaaagaacacacatggtgagtacttattaataagtggatat 682

                                                                       
Query: 61  tagccctgaagctcacaatgcccaagatacaacccacagaccatatagagagtagaagga 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagccctgaaactcacaatgcccaagatacaacccacagaccatatagagagtagaagga 622

                                                                       
Query: 121 aaggaagaccagggtgtggctgcttcagtactgccttgagggatgaataggaccactgtg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 aaggaagaccaggatgtggctgcttcagtactgccttgagggatgaataggaccattgtg 562

                                                                       
Query: 181 ggaggtggaaggcgatggaggcagggaaggaagcataagggtgtaaatagtttttcatga 240
           |||||||||||||||||||||||||||||| ||||||||||||||   ||||||||| ||
Sbjct: 561 ggaggtggaaggcgatggaggcagggaagggagcataagggtgta---agtttttcaaga 505

                                                                       
Query: 241 tgctgatttaattttttcaggttgtaaactccacaagtagaatcatttttgcaaactttt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 tgctgatttaattttttcaggttgtaaactccacaaatagaatcatttttgcaaactttt 445

                                                                       
Query: 301 atatactttaaacctcttaattttaaaaatattctttctttctttctttctttctttctt 360
           ||||||||||||||||||||||| |||||||||||||||                     
Sbjct: 444 atatactttaaacctcttaatttaaaaaatattctttct--------------------- 406

                                                                       
Query: 361 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 420
                             ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ------------------ttt-tttctttctttctttctttctttctttctttctttctt 365

                                                                       
Query: 421 tctttctttctttctttcttttctattggatattctctttattgactaaaaatattcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tctttctttctttctttcttttctattggatattctctttattgactaaaaatattcctt 305

                                                                       
Query: 481 taatcatcgaaaaattccatacattttgaagtagaggctgttctccactccgttgcctgc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 304 taatcatcgaaaaattccatacattttgaagtagaggctgttctccactctgttgcctgc 245

                                                            
Query: 541 ctgcctgtgaatcccgtttccctaactggactaccttgtctggtctcag 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctgcctgtgaatcccgtttccctaactggactaccttgtctggtctcag 196


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 986
Length adjustment: 10
Effective length of query: 579
Effective length of database: 976
Effective search space:   565104
Effective search space used:   565104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)