BAC Information

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BAC

Clone NameMSMg01-312J18
Chromosome1 (Build37)
Map Location 29,326,265 - 29,326,445
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312J18.T7 (MSMg01no312_j18.b1)MSMg01-312J18.TJ (MSMg01no312_j18.g1)
ACCAG434779AG434780
length746726
length of high quality
(start - end)
203 (42 - 244)291 (67 - 357)
definitionCHROMAT_FILE: MSMg01no312_j18.b1 PHD_FILE: MSMg01no312_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:43 2005CHROMAT_FILE: MSMg01no312_j18.g1 PHD_FILE: MSMg01no312_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAATGGAGTTCAGTGCTAAGCCAGGTAAAAAAACTGAATTGAAAGTTAG
GTATCAACAAGGTTCTTAACAGCAAGAACTGAAGAGTATCCAGCACTCAA
TTGAATATTATATATATATATATATATATATATATATATGTATATGTATA
TATGTATGTATATATGTATATATACATATATATATATAAGTGTGTATACA
TATAATGTTGTACATATGTATTGAACATCATACTGTCAGCTCCACAGACA
ATACGCTTTTGTTTTGCTTTTTTTAGTAGTATCACCCCTCCAGGCGCAGG
AAGGTTTTTAAATAAATATCCCAGACAAGGCCCCTTGGAGTTATAAGTTA
AAATGAAGTGTATCGCCCCCAAAAAAAAAAAAAAATGTGGGGGGGGGGGG
GGGCGTTCTTCCTTTTGCACTGATGTTCACGTAAATGCTGACTATGTCCA
GCTTTACTTCCTGAAAAAGACCATGATTTTACCATTTTTCCTAGTATTTC
GTTTCTTTCTTCGTTTCAGCCTTCTCTTCCCCGTTTTCTCCAATCTCCTT
TTCACATCTTTTTATTTGGCATTTCGCATAACCGTCCCTTGATCCCTGCT
ATTTTTTGTCTTCCTATTTACCCCCGATATTATCCTTTTTGCTCCAGTTT
TTTCTGTCAACCGGTTTGCCCGCTTTTTTTGATTTTTTTGCCCCCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACTACATAGGGACATGGAGCCTCCATAGGATCT
AGGGTTGCCCCTCCTAATGATGTCCAACAAGGCCATCCTTTGCTACATAG
TCAGCTGGAGCCATGGTGCCTTCCATGTGTACACTTTTCTTGATAGTTTC
ATCCCTGGGAGCTCTGGGAGTCTGGTTGGTGGATATTGTGGTTCTTCCTG
TAGAGTTGCAAACCCCTTCAGCTCCTTCAGTCCTTCCTCTGACTCTTCCA
TTGTGGTGCTTGTATTCTGTCCAATGGCTGGCTCCAAGTGTCCCCAAATA
TATTGTTCATGNNACTGCNAANACCCTNTCCGGGAACAGCTATACTAGGC
TCCTGTTAGTAAGCACCCTTAATAATAAAAAATAATGTCTGGGGGTGGTA
TCTTCACGTGGAATGGATCCCCAGTTGGGGCAGTCTCTGGATTGCTTTTC
CTTCACTCTCTGCTCCACTCTTTGCCCCTGCATTTCCTTTAAACAGGAAC
AATTGTAGAAACCATAAAATGTGGTTCTGGTGCCCTGCCTTTCACCATTG
AACTGAAATTTCTCCAAAGTCTGAGAAAGCGGTGTCTGAAAGTTCTGAAA
AAGACCCCTCAATTTGACAGTACTTTCTGAACTCCAAATTAATTGACCAT
TTTGTTTAAATTGGTTAACTGCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_j18.b1 MSMg01no312_j18.b1 CHROMAT_FILE:
MSMg01no312_j18.b1 PHD_FILE: MSMg01no312_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:43 2005
         (203 letters)



>mm_chr1_29326061_29326663
          Length = 603

 Score =  255 bits (132), Expect = 1e-72
 Identities = 169/182 (92%), Gaps = 9/182 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatggagttcagtgctaagccaggtaaaaaaactgaattgaaagttaggtatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatggagttcagtgctaagccaggtaaaaaaactgaattgaaagttaggtatc 264

                                                                       
Query: 65  aacaaggttcttaacagcaagaactgaagagtatccagcactcaattgaatat-ta-tat 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 265 aacaaggttcttaaaagcaagaactgaagagtatccagcactcaattgaatatataatat 324

                                                                       
Query: 123 atatatatatat-atatatatatatatgta-tatgtatatatgta-tgta-ta--tatgt 176
           |||||||||||| |||||||||||||| || | |||||| || || |||| ||  |||||
Sbjct: 325 atatatatatattatatatatatatat-tagtgtgtatacatataatgtactaagtatgt 383

             
Query: 177 at 178
           ||
Sbjct: 384 at 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)