ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAAAATTACAACTATAGTTTTCTTTGTAATAAGTAGCTCAAAGATG
ATATTTTCACAAACCTCATTGGAATTAATGTCACCAGTTGAAAATGTAAA
ATCACACTTAAGTGCTTGTAGTAATGCATTAAATTCTAAGCAATAAAGGT
GTAATTGTGATGTTCTGTTGAATAGCAGTTAGATATGCTATGTTCAGAAG
AAAATTGAAAACAGAAAGTCTGAAATGTCCAGTAAAAGTCATTACTTAAC
ACCATCAGAGACATTACTTATTTGGTATTTTGAAAGTCACTATTTTGGCA
GCTATGTGAAAATACACAGTCTCTAGAAAGGAAGTAAATGGACACCACAC
ACAGGGATATCTTTTAAAGTAATGTGTAGACTTAGGAAAAACTGTTCACT
AATACCTTGTGAATCAATATTCTCTGATCATTGTAGTTTATTCTTTTGAA
GCCTACTCAGCCATCTTACATTTTTCTTCTGTTTGTACGTTCACACGTGC
TTTATCAATCTATACCCAATTATTTTAGAGTGTGCTCCCTCAACTAGACA
GCTGATCTCACTAAGTAAAGGGCAGAAACTGTCCTTTCACTGTCCCATCC
TTGTCCCACCTTTCAAATTGCTTAGCTTTTGCTAGGGGACTGAGATAGAC
ATTGAGACTCATTTACCTGANAGGACACCCGATATATAACAATGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAAGAAGCAACGGGGGGGGGGGGGGGGA
GAAGNCCCCGCCTGTCCACAAATGATACCATTGCCTGGAGCCTTCCCGCT
TCCTATAAATTCTTTGAATTGATGAGCATGGCCCCTCTCGGAAGTTTTCT
TTGGAAATTCTCCCCTGGTTTCCGGAACCCTGTCCACGTCCTAATTTGCT
TAGCAAAAAGGCCCCTGGGTAAGAGCACGTTGAAGGTTGTGCCCCCTGAC
CACCACCGGGAATTTTTTTTTTTGCCGTGTGGACCGCAGCAGCCGTGTAG
AGAAGGTTAAGGTAAACTTCCGGGGGGGCGNGGAGCCGAAGAGAAAAAAA
TGAGGAAAGAAAGGGGAGGGTGGCCCCCCCCCCAAAAATNAATNTAAAAA
AACGTGGGGGGGCCTGTCCNGGGCGGGATTCTTTTCCACTACTTCACAAT
GATATAACTGTCTCGTTATTTGGTTATCACTTATTTCCTAGATTTTGCGT
ATACTCGCCGAACGAATTATTATCTCGCCCTTTACCCTGCCAATTGTTTG
CTCTCCACTTTCGTGTCCAGTTTTTTTTTTTTCCCCCCTCGCGAACCCGT
AGATTCACACACTCGCTTTGTCTCCTAATTATTTAATTATATCCTGAGCT
CCCATGTCGGCGCCATAATGTTACTCCTTCTCTCCCCTTTGACACTATTT
TGTTTATATCCGCGCACGCGCACAGTAAGATTATTTAATATACTCTGGAA
ATCTTATAGACAATATATCTCTCCACCTTGTTTGTCACCCTCTTACTTTG
CATGTCTTTTCGCTTCCGTACCACCTTCCGTCCCTTAAGTCN

Query= MSMg01no312_m08.b1 MSMg01no312_m08.b1 CHROMAT_FILE:
MSMg01no312_m08.b1 PHD_FILE: MSMg01no312_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:55 2005
         (647 letters)



>mm_chr1_25379253_25380299
          Length = 1047

 Score = 1181 bits (611), Expect = 0.0
 Identities = 635/643 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaaaattacaactatagttttctttgtaataagtagctcaaagatgatatttt 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaaaaagataactatagttttctttgtaataagtagctcaaagatgatatttt 264

                                                                       
Query: 65  cacaaacctcattggaattaatgtcaccagttgaaaatgtaaaatcacacttaagtgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaaacctcattggaattaatgtcaccagttgaaaatgtaaaatcacacttaagtgctt 324

                                                                       
Query: 125 gtagtaatgcattaaattctaagcaataaaggtgtaattgtgatgttctgttgaatagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtagtaatgcattaaattctaagcaataaaggtgtaattgtgatgttctgttgaatagca 384

                                                                       
Query: 185 gttagatatgctatgttcagaagaaaattgaaaacagaaagtctgaaatgtccagtaaaa 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttagatatgctatgttcagaagaaaattgaaaacagaaagtctgaaatgtccagtaaaa 444

                                                                       
Query: 245 gtcattacttaacaccatcagagacattacttatttggtattttgaaagtcactattttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcattacttaacaccatcagagacattacttatttggtattttgaaagtcactattttg 504

                                                                       
Query: 305 gcagctatgtgaaaatacacagtctctagaaaggaagtaaatggacaccacacacaggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagctatgtgaaaatacacagtctctagaaaggaagtaaatggacaccacacacaggga 564

                                                                       
Query: 365 tatcttttaaagtaatgtgtagacttaggaaaaactgttcactaataccttgtgaatcaa 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatcttttaaagtaatgcgtagacttaggaaaaactgttcactaataccttgtgaatcaa 624

                                                                       
Query: 425 tattctctgatcattgtagtttattcttttgaagcctactcagccatcttacatttttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattctctgatcattgtagtttattcttttgaagcctactcagccatcttacatttttct 684

                                                                       
Query: 485 tctgtttgtacgttcacacgtgctttatcaatctatacccaattattttagagtgtgctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 685 tctgtttgtacgttcacacgtgctttatcaatctatacccaattattttagagtgtgctt 744

                                                                       
Query: 545 cctcaactagacagctgatctcactaagtaaagggcagaaactgtcctttcactgtccca 604
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 745 cctcaactagacagctgatctcactaagtaaagggcagaaactgtcatttcactgtccca 804

                                                      
Query: 605 tccttgtcccacctttcaaattgcttagcttttgctaggggac 647
           ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tccctgtcccacctttcaaattgcttagcttttgctaggggac 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)