BAC Information

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BAC

Clone NameMSMg01-312N08
Chromosome1 (Build37)
Map Location 20,011,361 - 20,011,646
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N08.T7 (MSMg01no312_n08.b1)MSMg01-312N08.TJ (MSMg01no312_n08.g1)
ACCAG434941AG434942
length737744
length of high quality
(start - end)
248 (43 - 290)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no312_n08.b1 PHD_FILE: MSMg01no312_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:00 2005CHROMAT_FILE: MSMg01no312_n08.g1 PHD_FILE: MSMg01no312_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAGACAAAGGCAATTTCAGGGGGTCTCCTTCGATCCCCTGAAACTCA
ATTTTAGGTCATAATTGCAGAAACTATTATATATATATATATATATATAT
ATATATATATATACATATATATATATATATATATATATATATATATGCTT
AAAAATAATTTCCCAGCATTGTTGACATGTCAGCATGCTAGCATGTATAC
CAAGTAGCTAGTTTGTTATAGAGGATGTTTGGGGTCCGAGGGCATTTTAG
AGACCATATACTCTGTATACCCAGGTATGATTCCTTGGTGGCTATATAAT
CCAGTTTTTTTATTTTTTGCCCCCCCCCCCCGCCTCCCCATTCCATCCCA
CATTCTCTCAGCCAGCCCCCCCACTAAAAAAAAATGATCTGGGGAGCCTG
TCTACCACATTTGCATATTTTATAATAGCCATTCTAATGATATGAAGGAC
CCTGTAGTAATGTACTGTACTTGTCCTCTATTGCTTCATTTTTTGTGTTC
ATACGTTTCACATCTGATTTCTTTTATACATATACGATAATCTCACCTGT
ATCTCTGTTTTGTCTGCTGTCCTTTCATTTTCCTTTCCTTTTCATTTTCA
TCCTTTTTATCCCTTTTCTTCCACTTTTTATCTCACCTATGTTCTCTCAC
CCATTCTCCTCCCTTTTTCTCCTTTTTTTTCCCCCCC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCAGGTGGTTTCTCTGTGTTGGAAATAT
ATCTCTTTAGATAATTTTGAAAATTTTCCATGGTTATTTATTATATTCAT
TTATTTTTATTTGTATTGAGCTGTTTGCATTCCTCACATGTGCTAATGAT
TATTTCTTCCCAGAACCATAGATAACATTTTGCCTCAATGAATGCACACA
TGGAATATATATCTGTATACACATAGGATATACATATACAGTTTGGTTGT
TACCTTTACTGTATAGAAACTCTTTAGTGTTTGGTTTATATTTGTTTAGT
TTTTTTCTACTTATTTTCCTCCCCCCCCCTCTCTACTTCTTTTCTTTGTT
CCCCCCACTCCCTCTTTCCGACAAAAAAAAAAAATAAGTGGGGGTGTGGG
TCTGGAGCTTGTTATACAGATCAGGCTGGTCTTGAACTCACAAAGATATG
CTTATTTCTGCCTCTGAACTGCTGGAACTAATAGTGTGTACCTCCTTGCC
CTACATGCTCTCTGTTCTTTGAGATTTAACATTTTTATTATATTAAATAT
GTTCCTTTTACCTATTTCTCGGTTTTTTTCTGCTTCATGTCTCTCCTTTT
ATTGAGATTTTTTTTTTCTTAACTTTTTCCATTACTTTTTTTACACGACA
CCTACTATTCTCGCTTCATTTCAAAATAATATATATATTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n08.g1 MSMg01no312_n08.g1 CHROMAT_FILE:
MSMg01no312_n08.g1 PHD_FILE: MSMg01no312_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:00 2005
         (286 letters)



>mm_chr1_20011161_20011846
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggtggtttctctgtgttggaaatatatctctttagataattttgaaaattttccat 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tccaggtggtttctctgtgttagaaatatatctctttagataattttgaaatttttccat 260

                                                                       
Query: 61  ggttatttattatattcatttatttttatttgtattgagctgtttgcattcctcacatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttatttattatattcatttatttttatttgtattgagctgtttgcattcctcacatgt 320

                                                                       
Query: 121 gctaatgattatttcttcccagaaccatagataacattttgcctcaatgaatgcacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctaatgattatttcttcccagaaccatagataacattttgcctcaatgaatgcacacat 380

                                                                       
Query: 181 ggaatatatatctgtatacacataggatatacatatacagtttggttgttacctttactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatatatatctgtatacacataggatatacatatacagtttggttgttacctttactg 440

                                                         
Query: 241 tatagaaactctttagtgtttggtttatatttgtttagtttttttc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagaaactctttagtgtttggtttatatttgtttagtttttttc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)