BAC Information

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BAC

Clone NameMSMg01-313A23
Chromosome1 (Build37)
Map Location 66,661,714 - 66,662,118
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A23.T7 (MSMg01no313_a23.b1)MSMg01-313A23.TJ (MSMg01no313_a23.g1)
ACCAG435101AG435102
length1,1971,216
length of high quality
(start - end)
416 (37 - 452)384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no313_a23.b1 PHD_FILE: MSMg01no313_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:19 2005CHROMAT_FILE: MSMg01no313_a23.g1 PHD_FILE: MSMg01no313_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCCGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCCCTCAGACAAATTCACTGAAGCCAGGGACAGAGTTAGAAACAGCCAAC
CCCCAAGGAATACATCACCAAAGCTGCCATCTGGCAGCTCCTCATCTCTA
CCCCTCTCTGCATCATCTCTGTTAACTACTCTGTCCTGTAGCCATCTCCT
CTTGCTTTGTACATGTTATGCTTTAGGCTGAAAATTCCAAGGTGGTAACA
CTCTTTCTAGCACCTAACTTTTCTCACTATAATAGAGTAACTTATTGGTG
TCCGACCCTCTGTTTAAGCCAAATCCCATAAGTGAGGATTCCTTGGCCAG
TCCAGGCTGGTTTTGCATAGCAAATGTAATCTAGAGCAATCAAGTATGGA
TGATTTTGAAAGATACATTAATATACATATCATGCACACACACACATACA
TTTTTACACACCCCCACAGCACTAGTTGGCCTTCCCCAAAAAAACTGAGC
GATCTTAAGCCCTTATGGCTGTGTCTTTTGACTCAGGTGCCGTGGTAGAA
GCACATCAGGAGTGGATAAAGTCCTTGCTACATAAACTTTCCTGAAAACA
ACAAAAACCTATTCACTCTGTATAGAGAAGTAGCCAGCACACCAAAGAAA
GGATTCCATTCAAGCCCAGCTTGGTGAACCGTTGAGTTATATACTCTTAG
CCAGCTATATCACTAGGAAGTCTCCTGGGCAACAGAATTCTCTCTCCTAT
AATCTCAAGATATTTCATAAGAGTCTGTAGAGAACCTCATGAGGGTCTAC
TCTCTCTCCTGGTGGAAATGTCAACAGGTCATCTCCTGCATGTGATCACA
GTTGCTCTGCTGCACAACAGTATGCTCGTGTCCATCCCAAAGCAAACAGC
TGAACTGTAGTTCTCTATAGAGATGGGCTCTGTTCTTTGTCTTTGTTTAT
TCAGCTCAGATTTCTCTACAGATTCTTGCTTGAAGTCTAATTCTAACCAT
TTATGTAATCCAGTGAAATCCAAAATTGCAAAAACCCCTTCTTAAAGTCC
TGGAAAAAAAAGGCGCCATTCCAATTTATGCCTAAAATTTTTTTTTTTTT
TTTGGAGGTTTTTTTTAAAAAAAAAAACCCCCAAAACAATTTCTTCCCAA
TTTTGTTCGAAGGAAAAAACACCCCCCCTAAAAAATTTCTCGATATT
NNCCATTCACGGNAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTACCAGTCCATATTTAGTTCAAGATG
GATTAAAGACCTAAACATGAAGATGCAAAACTCCTGGGAGAAAGTGGAGA
GAAAGAGCTTGGCATATAGTTCTGGCAAAGATTTTCTGGATTTGGCCTTA
AAAGCGTCAACAAATGCAAGAATAGACAAATGGCATTGCATTGAATTGAA
AACTGATGCCCAACAAAAGAAACAATGTGAACAAACAACCTATAGAATGG
AAAATTGCTAGTCCTACATTTAACAAGTTAATGATCAAGGGATATACTCA
AGCCAGACAAACAGTAACAAGAAAACAAAGACTAGACTTTTCTCTAAAGA
AGACATAAAAAAAAAATGCAACTCAACATTACTAATCATCAGAAGATCCC
ATATTATTTCTCCCCCCCCATAAAGTCTTACATGTGTGAAAAAAAAAAGC
CTAAGTGCTGGAGAGAATACAAAGGAACTTTGCATATTGTTGATAATATA
AATTAGTACAGCCTTTATAGGAAAAGAAACTTAAGCTAAAAACCCCAGAT
CTATCTTGTATACTCCAGCAATCCTACTCTAGATATATCCAAAGGAAATG
AAATCAACAAATGGAATCATTTCTGCATTACCATTGTAATCTTCATCCAC
AATCAAATATGGAATGAAATATTATTCAGCCTTTGGGAAAAAAGTGAAAT
ACATCACTTGTCAAGTAATTGAGCATAGATGTCAATAATTGAAAAATGAA
TGTCTGATCTCACTTAGGAGGAAAATCTAAAACAGCCATAACACAGAAGC
CTAGTAGACTAGTGCTTACCGGATTGCTCTGGGTGAGGTGGGGAGAGGAG
GAGGATGCTGNCAACNGTGACTGTTTCCCCGTANATAACCAAGTTCCAAA
AGCTCTTTTGTCAATATGCCTGACTATTTCTATAAAAATGTGGTGCCGCC
GGCAACTCCTAACATACAATCTCAATCGCTCTTCCACATGAAAATGCTTC
TCTCAAGTATTACATCTCTATATACCCTCCCTTTAATCCCCTCCCCCTTG
TCCCTTCTCCTCGCACCCCCCTTCCCCCCCGCATACCCTCCTCCTATTTT
CTCCTCTTCTTCCCCTCCCCTCGCCACACTACTTCTCTTCACCACACCCC
CCCTTTCTCCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a23.b1 MSMg01no313_a23.b1 CHROMAT_FILE:
MSMg01no313_a23.b1 PHD_FILE: MSMg01no313_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:19 2005
         (416 letters)



>mm_chr1_66661504_66662320
          Length = 817

 Score =  775 bits (401), Expect = 0.0
 Identities = 404/405 (99%), Gaps = 1/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattcc-ctcagacaaattcactgaagccagggacagagttagaaacagccaaccccca 69
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattccactcagacaaattcactgaagccagggacagagttagaaacagccaaccccca 270

                                                                       
Query: 70  aggaatacatcaccaaagctgccatctggcagctcctcatctctacccctctctgcatca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aggaatacatcaccaaagctgccatctggcagctcctcatctctacccctctctgcatca 330

                                                                       
Query: 130 tctctgttaactactctgtcctgtagccatctcctcttgctttgtacatgttatgcttta 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctctgttaactactctgtcctgtagccatctcctcttgctttgtacatgttatgcttta 390

                                                                       
Query: 190 ggctgaaaattccaaggtggtaacactctttctagcacctaacttttctcactataatag 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggctgaaaattccaaggtggtaacactctttctagcacctaacttttctcactataatag 450

                                                                       
Query: 250 agtaacttattggtgtccgaccctctgtttaagccaaatcccataagtgaggattccttg 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agtaacttattggtgtccgaccctctgtttaagccaaatcccataagtgaggattccttg 510

                                                                       
Query: 310 gccagtccaggctggttttgcatagcaaatgtaatctagagcaatcaagtatggatgatt 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gccagtccaggctggttttgcatagcaaatgtaatctagagcaatcaagtatggatgatt 570

                                                        
Query: 370 ttgaaagatacattaatatacatatcatgcacacacacacataca 414
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttgaaagatacattaatatacatatcatgcacacacacacataca 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 817
Length adjustment: 9
Effective length of query: 407
Effective length of database: 808
Effective search space:   328856
Effective search space used:   328856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)