Query= MSMg01no313_c21.b1 MSMg01no313_c21.b1 CHROMAT_FILE:
MSMg01no313_c21.b1 PHD_FILE: MSMg01no313_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:35 2005
(762 letters)
>mm_chr1_143319195_143320356
Length = 1162
Score = 1388 bits (718), Expect = 0.0
Identities = 752/768 (97%), Gaps = 11/768 (1%)
Strand = Plus / Plus
Query: 1 tttctagcataaatggatgagctataaatgaaaacttagatgttcagaaccccaa----t 56
|||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 200 tttctagcataaatggatgagctataaatgaaaatttagatgttcagaa----aaagaat 255
Query: 57 taggcagagccaatgactcaaatagtaaaatgttctcagagtaagttagaatattctacg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taggcagagccaatgactcaaatagtaaaatgttctcagagtaagttagaatattctacg 315
Query: 117 acataactttaaactctttccataaattcaagcagtaagttgaaaaaaaccataattatt 176
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 316 acataactttaaactctttccataaattcaagcagtaagttgaaacaaaccataattatt 375
Query: 177 ttagaaataatcagtgattaacttgatcactgattaaacttgatgactagattcattctc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttagaaataatcagtgattaacttgatcactgattaaacttgatgactagattcattctc 435
Query: 237 aaagcaatatttataccagaaaatatttatatttttcttttagcacttaccatgttaaat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaagcaatatttataccagaaaatatttatatttttcttttagcacttaccatgttaaat 495
Query: 297 aattttctgatctctttttaatatcaaaatttaacattatgaaattttgttacaataacc 356
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aattttctgatctatttt-aatatcaaaatttaacattatgaaattttgttacaataacc 554
Query: 357 ttttaatttaatttccaatttcatttttgaggatataatattactacagcatttctctca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttttaatttaatttccaatttcatttttgaggatataatattactacagcatttctctca 614
Query: 417 ttcatttcatccctctaaatcatcccatttatcagtctaattctccttcaaattcatgga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcatttcatccctctaaatcatcccatttatcagtctaattctccttcaaattcatgga 674
Query: 477 ctctttttgtttcaactaatttttattgcacaaatatatgtatattagtaaacataacct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctctttttgtttcaactaatttttattgcacaaatatatgtatattagtaaacataacct 734
Query: 537 gtttagtttgcatactgttacttgtatatacgttttcatggatgaatgaaactgaagaag 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 735 gtttagtttgcatactgttacttgtatatacgttttcatggatgaatgaaactgaaaaag 794
Query: 597 aaattgttgtgtgattttttttt--aatcattgtccaggagaggtttaactaaatgaaaa 654
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 795 aaattgttgtgtgatttttttttttaatcattgtccaggagaggtttaactaaatggaaa 854
Query: 655 atggagctcacagatatttctatatgttattcagggtgtggtacagaattaagaaactat 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 atggagctcacagatatttctatatgttattcagggtgtggtacagaattaagaaactat 914
Query: 715 agaagctgggcagtggtggtgaacacctttaatcccagcacttgggag 762
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agaagctgggcagtggtggtgaacacctttaatcccagcacttgggag 962
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space: 866304
Effective search space used: 866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_c21.g1 MSMg01no313_c21.g1 CHROMAT_FILE:
MSMg01no313_c21.g1 PHD_FILE: MSMg01no313_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:35 2005
(382 letters)
>mm_chr1_143472393_143473174
Length = 782
Score = 700 bits (362), Expect = 0.0
Identities = 375/380 (98%), Gaps = 2/380 (0%)
Strand = Plus / Minus
Query: 1 taaagaaagctatctgtgcacctttcttccattctcggaattgtttctaaataacgaaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 572 taaagaaagctatctgtgcacctttcttccattctcggaattgtttctaaataatgaaat 513
Query: 61 ttccctgggaatctgctcgaccataaggctaggaccttatctgttgaggagaacagctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttccctgggaatctgctcgaccataaggctaggaccttatctgttgaggagaacagctac 453
Query: 121 agcacagaagagatttccctagaatctttaacatatctccttagttaggacatatagaca 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 452 agcacagaagagatttccctagattctttaacatatctccttagttaggacatatagaca 393
Query: 181 tatcctggtctttgttttacctattcataaatatgtaacactattgtacaaaaagtagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tatcctggtctttgttttacctattcataaatatgtaacactattgtacaaaaagtagag 333
Query: 241 agaaaccatgaatttttctctccctagttaaaattaaaatgtgaatctatgagtttttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agaaaccatgaatttttctctccctagttaaaattaaaatgtgaatctatgagtttttct 273
Query: 301 tcattaattttagttatctactttattaaactattggacgtcttcacaattaatcaatta 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcattaattttagttatctaatttattaaactattggacgtcttcacaattaatcaatta 213
Query: 361 attttaattcccccaaaaaa 380
|||||||||||| ||||||
Sbjct: 212 attttaattccc--aaaaaa 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
