Query= MSMg01no313_d11.b1 MSMg01no313_d11.b1 CHROMAT_FILE:
MSMg01no313_d11.b1 PHD_FILE: MSMg01no313_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:39 2005
(422 letters)
>mm_chr1_40146824_40147646
Length = 823
Score = 661 bits (342), Expect = 0.0
Identities = 391/408 (95%), Gaps = 5/408 (1%)
Strand = Plus / Minus
Query: 18 gaattctgcagctacgtcagggagatataaacagtttccacctggttccctcacagaaac 77
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 623 gaattctgcagctacgtcagggagatctaaacagtttccacctggttccctcacagaaac 564
Query: 78 cccgtcaacatagaagcagcctgattgtccccagggaggccaggtggaaggggtcttggc 137
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccagtcaccatagaagcagcctgattgtccccagggaggccaggtggaaggggtcttggc 504
Query: 138 tgagctgtcagcaacctctccaacaccgc--caaggataccacccatgtgaggtaaccat 195
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct: 503 tgagctgtcagcaacctctccaac-cc-catcaaggataccacccatgtgaggtaaccat 446
Query: 196 cttagactccacaaacatatcc-ttcattaactgataaccactgttgggacccggttgaa 254
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttagactccacaaacatgcccattcattaactgataaccactgttgggacccggttgaa 386
Query: 255 atacacagcagagaggaatgatctggcttttctcaagtgtacggtctacatgatgtatga 314
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 385 atacacagcagagaggaatgatctggcttttctcaagtgtatggtctacgtgatgtatga 326
Query: 315 gttgtaacaacaaagtgacaagcggccacattttagtgtagttttccatggaacatattt 374
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 325 gttgtaacaacaaagtgacaaacggccacattttagtgtagttttccatggaacaaaggg 266
Query: 375 taagtgctcattcaaaagccagttccaagggactgctagggtcagagt 422
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagtgctcattcaaaagccagttccaagggactgctagggtcagagt 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space: 336182
Effective search space used: 336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_d11.g1 MSMg01no313_d11.g1 CHROMAT_FILE:
MSMg01no313_d11.g1 PHD_FILE: MSMg01no313_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:39 2005
(381 letters)
>mm_chr1_39988323_39989103
Length = 781
Score = 702 bits (363), Expect = 0.0
Identities = 375/379 (98%)
Strand = Plus / Plus
Query: 1 agcctagcctggtgtaacccattctattcttaattccagccaccctaagaagctctgtta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agcctagcctggtgtaacccattctattcttaattccagccaccctaagaagttctgtta 260
Query: 61 gcctatcttttcccgattctcctaccgacgtgactaaccccctagcaccgcgctcactcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gcctatcttttcccgattctcctaccgacgtgactaaccccctagcaccgtgctcactcc 320
Query: 121 ttaatgcctgttctgctttcacagtgctctgcacgtcttactgtcagtgacagtcctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatgcctgttctgctttcacagtgctctgcacgtcttactgtcagtgacagtcctttg 380
Query: 181 agatgcagagttagtgcccatgacacagtaggttgggcacctgccggacactacatccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgcagagttagtgcccatgacacagtaggttgggcacctgccggacactacatccac 440
Query: 241 atttgtgggaaaggtgtgattaagattaagagcccggcagcattaggcttcgcagctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgtgggaaaggtgtgattaagattaagagcccggcagcattaggcttcgcagctcct 500
Query: 301 ttcttcgtgctcaccctgctcacccttcttcatcttcctttccccgttgtgggctcgttt 360
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 501 ttcttcgtgctcaccctgctcacccttcttcatcttcctttctccgttgcgggctcgttt 560
Query: 361 tcattctctccactgtgtt 379
|||||||||||||||||||
Sbjct: 561 tcattctctccactgtgtt 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
