BAC Information

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BAC

Clone NameMSMg01-313D14
Chromosome1 (Build37)
Map Location 162,805,720 - 162,805,920
singlet/doubletsinglet
Overlap genenone
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313D14.T7 (MSMg01no313_d14.b1)MSMg01-313D14.TJ (MSMg01no313_d14.g1)
ACCAG435216AG435217
length1,2361,197
length of high quality
(start - end)
419 (29 - 447)200 (184 - 383)
definitionCHROMAT_FILE: MSMg01no313_d14.b1 PHD_FILE: MSMg01no313_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:40 2005CHROMAT_FILE: MSMg01no313_d14.g1 PHD_FILE: MSMg01no313_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGTCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGAGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTCCAATATATTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTT
TCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATTAGG
TCCCATTTGTAGATTCTCGATCTTACAGCACAAGCCATGGCTGTTCTATT
CAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCT
CCTCAATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTATTCCAC
TTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCTTTTTTT
TTTACCCCCCCCCAACCAGTTGTGCCTTCACCAAAAAAAAAAGATGCTGT
CTTTTTTCCACTGGATGGTTTTTGCTCCCTTGTCAAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCGCTATACCAGTACCATGCAGTTTTGATCACAATTGCTCTGT
AGTACAGCTTTTGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCC
TTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTTGTTATTCCAGAAGAATT
TGCAGATTGCCCTTTCTAATTCGTTGAAGAATTGAATTGGAATTTTGATG
GGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAAATAGCCATTTTTAC
TATATTGATCCTGCCCATCCCTGAGCTTGGGAGATCTTTCATATGGCACC
GTCTACAGGCCTTGACTTCAGGCTTATTAAAATACCTACCAACTTGTGGT
TTATCTAAATGGCGCGTTTTTCACACCTTTCCCTTGGTTGACTTCCCATT
ACTCCTGAATTTTTTTTTTAGCGAATTTCCCTGCCTTACTTTGCAAATAA
AGCGCTCTTTTTTCTCTAATACAACACTATTCCTCATGTGTCTTTGCTTC
TCACATCTTATTTCTCATGTTTTTTCTTTTGCCTTCCTCTCCTCTTTTCT
TCTCCCACCTTCTTTCTTTTTTTTTCTTATTCTTTACTCCCCCCTCTACA
TACTATTAATTCTCTTCTTCATTTCCTTTTTCTCTT
NNNTTGTTGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTCTGTAGCCAAGGAAGCTGTTGATCCC
CCCTTCTCCATTCCCCAAGGGCCGGCATTGGAGGGGGGTGCCCTGACTCT
GGGTGAAGGATCTTCATTAGGGCTTGTACCCTGACTTCTTTCACCATCAG
GNATGCACACACCCCCATTTAATTTCTTTTCTTCTGACTTTTTTTTTTTC
ATACTTACTTTACAAAAGTTAAAGTCCATAATGCCTTCTTGATCAATTCT
ATATTCAGCTGACAAACCTCTTTTTTTTCACGGGGTTCTTTCAAATACTG
TTCCATTCAATTTTAAACAATAAGAAAGACAAGGGACNNAATATTTTTTT
TAANCCNNNGGNNCAGAAAGAACCCCCCGGGGGGGGAAAAAGGGNNNAAT
AGTAATCCCCGGCCCCCANANNNNCCCCCCCCCCCCCAACCACAAGAAAN
GGNNNNNNNNNNNNNNNNNNNNNNNNNNTNTTTNNNNNNNNNNNNNNNNT
TNNNNNTNNNTTTTNTNNNNTNNNNNNNNNTNNNTNNNNNNNNNNNNNNN
NNNNNNTNNTTNTNTNNNNNNNNNTNNNNTTNNNNNNNNTNNTTTNNNNN
NNNNNTNTNNNTTNNTTTNNNNNNNNNNNNNNNNNTTNNTTTTTNNTTNN
NNTTTTNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTNTTTTTTTTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTTNTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNTTTTTTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNTTNTNNNNNNNNNNNNNNNNTTTTTTTTNNNT
TNTNNNNNNNNNTTNNTNNNTTNTTTNTTTTTTNNNTTTNNNTTTTTNNT
TTTNNTNNNNTTTTNNTNNTTTTTNNTTNNNTNNNTTTTTTNTNTNTTTT
TTNNTTTTTTTTTTTTTTTTTTTNTTNNTTNNNTTTTTTTNNTTNNTTTT
TTTNNNTTTNNTNTTNNNNNNNTTTTTNNTNNTTTTNNTTTTTNNNA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_d14.g1 MSMg01no313_d14.g1 CHROMAT_FILE:
MSMg01no313_d14.g1 PHD_FILE: MSMg01no313_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:40 2005
         (200 letters)



>mm_chr1_162805520_162806121
          Length = 602

 Score =  294 bits (152), Expect = 2e-84
 Identities = 188/205 (91%), Gaps = 10/205 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctttcaccatcaggnatgcacacacccccatttaatttcttttcttctgac--ttt 58
           |||||||||||||||||| | |||||||||||||||||||||||||||||||| |  |||
Sbjct: 401 acttctttcaccatcaggcacgcacacacccccatttaatttcttttcttctgtcttttt 342

                                                                       
Query: 59  ttttttttcatacttactttacaaaagttaaagtccataatgccttcttgatcaattcta 118
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 341 ttttttttcatacttactttacaaaagttaaagtccataataccttctttatcaattcta 282

                                                                       
Query: 119 tattcagctgacaaacctcttttt----tttcacggggttctttcaaatactgttccatt 174
           |||||||||||||||||||    |    |||||||| |||||||||||||||||| ||||
Sbjct: 281 tattcagctgacaaacctc----tggagtttcacggtgttctttcaaatactgttgcatt 226

                                    
Query: 175 caattttaaacaataagaaagacaa 199
           |||||||||||||||||||||||||
Sbjct: 225 caattttaaacaataagaaagacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 602
Length adjustment: 8
Effective length of query: 192
Effective length of database: 594
Effective search space:   114048
Effective search space used:   114048
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)