BAC Information

Click to search

BAC

Clone NameMSMg01-313F11
Chromosome1 (Build37)
Map Location 168,111,094 - 168,254,607
singlet/doubletdoublet
Overlap geneMael, LOC100039795
Upstream geneSft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313F11.T7 (MSMg01no313_f11.b1)MSMg01-313F11.TJ (MSMg01no313_f11.g1)
ACCAG435296AG435297
length1,3091,296
length of high quality
(start - end)
727 (87 - 813)379 (73 - 451)
definitionCHROMAT_FILE: MSMg01no313_f11.b1 PHD_FILE: MSMg01no313_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:55 2005CHROMAT_FILE: MSMg01no313_f11.g1 PHD_FILE: MSMg01no313_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,253,881 - 168,254,607)(168,111,094 - 168,111,472)
sequence
NGTATTTNNNNNNGGCACTGGGCGCTATAGACTCCTAAGGGAGXXXXXXX
XXXXXXXXXXXXXXXXTGGGTATCACTTAGATAGTGTATAAGAAAGCCAG
CTCGGTCCTGACAGTGTTTTAAAGAACAGTGTTCCTCTGCAGTTTCTGGC
TCTGTCTTCCTCTTTTGAATTCCTTTTCTGATTTCCCTCAGGGATGGACT
GTGATCTGGAAGTGTAAGCAAATAAATTCATTCCTGCCCTAAGCTGCTTG
CAGTCTGAGAGTTTTATCCCAACAGAGGGGAACTAGAACATAGCTCCTAA
GTCTACATATCCAAAGACTGTAACCATGACATTCAGGATTAGTGTTCTAA
CATGTGAATAGAGGACCAGGGTTGCAGGCACAAACAATCCACAGAACAAG
AGAAATAAAGAATTCTCCTGAAGAGGGAAGGCACCTTGCCCAACATCCAG
TATTTTTCTCATAATTATCTAGAACAGTGATTCTCAACCTTTCCAATACT
TCAACCCTTTAATACAGATCCTCGTGTCGTGAGTTCCCCCTCCAACCATA
AAAATATTTGTGTTGCTACTTCATAACTGTAGTTTTGCTACTGTTATGAA
TCACAGTATAAGTATTTTTGGAGATAGAGGTTTGCCAAAGGGCTCGATCG
AGATGCACAGGTTGAGAACCTTAAATCTAGAGCCTCTGGCAACAAAGCAG
AAAATTAATACAGTAGAACACAGTGTCTGCAGTGGGAGAGGAGACATGGA
GATACTGGAGCGATCAAGGAAAGACACTAAAGGTCTTTTCTAACCAAGGT
GGCGGCACAGATGGGTTTATAAGTCCAAAACAAGTGAAGCCTAGAAGTTG
TCCCAGGCTTTAGTGGGATTTGTCACTGAGCTGCAGTGGAAATAATCTCT
CTGGTGCCCTGAGTGAGGATGCTCTGTCTGAGAAGTCTGCCAGCAGATCA
AACTTGAAAAGCTGCTTTTTCATGCTTTTATAACCCCGGAGAAAAATATT
GATGCCCCATTATAAAACTGGTATTATACATGGCTTTTTGGTTTGATTTT
CCCCATTCCTATTAAAAACTTTTCCTCCCTTGGTAACAATGTTTTTTTCT
CCACTGTTTTAAATTTTTTCTTCTATCATATTAATTATTTAATTATCCAC
TGTCCCTCTTCAACATTATTTTTATCTTTCATATGTTTCTACATACTCTT
TATTGTCTCTCCTTCTTCCTTCTACTCTCTCATTATATTTGTTCTACTCT
TCCTCATTCTTCTATCATAATCTATCATCTTCATTTTTCTCTTTCCTCTC
TCTTCTCTC
NNNNGGCTGTGGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACTGGTTGCAGACCAAGTTAAACTAAA
CTTGGCCTGATTCCTTATGTAAGAAGCTACAATCTAACTCAACAAGTAAA
TAAATAGAAAACCTAACAACTGAGGAATTGGCCCTATAAGGAATAGCTGG
ATCCCAGCCATTTACAGCCATAGGCATTGGCCAATCACAGGTAGCCAACT
GTCTAGACTACATTCAGGTGAAGCCAACAACTGTGACCAACCCGACTCCC
TTTGTGCCTGCCTCCATCTCTGTGTCACCTCCTTTTTTCTCACTAGAAAT
GTAATTTGCAAGCGTGCTGAGCTGCAGTAGTCTGTTTTGCTGCCAGATTC
TAGAATTGCAAATAAAACCCAATTAAGACTGCAAAACTAGATTTGTTGTG
ATTTTTTCTCTACCCCCGCTTTTCTGTGGTCATCATTTCCCAAAAAATTT
CTATATGCTCCTGTGTATGGAGGTGGCATTCTCAGGCAGAGAGAGAGAAT
GATAGAGAGATGGACAGACAGACAGGCAGACAGATGGCAGTGTGTATTGT
GGAAGCTATAGAGAAATAAAGCCCAGACCTGTCCACCGAGTTGCATTTAA
ATCATGTGGCCAAGGCTATGAGGTGTATGGATCTGAAAATGTTTGCTTAG
GCTCCAGACCCTGAGACTACCCTGCCTCTAGGAGACATTGATCCCCAGAG
AGACCCTTCCTGGTTAATAAAAAATCTGAAGTTCCGCTCTTGACAGCATG
GAGGCCTCCTAGGTCCAGAGGTTGAGAGCCCCATGAATGCGCCTTCCTTA
CTTCTTCTGAATCAGACCCCGCTTGATGCTTGAAACTGACATGCCATGCC
CCCATGTCCCCGAAAAAACCCGGAATGATTGGGCTTTTCCCAGCGTCCGA
ATGACCCAAAATAAATACTTTCCTCAGGTAAATCCATTTTGTTACTTGCC
ACCCGCCAATTATTTATGTTTATAAAGTTACCTTTTTCTAACCCACCTAT
TGGTTTATTATCTATAAACATCTTGTCATCCTCATCCTTCTTTTCCTCTT
TCCATACACCAATCACCTCATTCTTAATCCTTCACATCTTTTCTTTCATC
TTATCATTTTTCTTCCGTCTCTGCTCTTATCTCCTCTCCATCAATTTTCA
CTTTTATTCTTTTTCCTACTCTCTATATTCCATTTTATCCGCCCATTCCT
CCACCCTTCACATCCCATATCCATCCGNTCCCTCACTTATCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_f11.b1 MSMg01no313_f11.b1 CHROMAT_FILE:
MSMg01no313_f11.b1 PHD_FILE: MSMg01no313_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:55 2005
         (727 letters)



>mm_chr1_168253816_168254942
          Length = 1127

 Score = 1328 bits (687), Expect = 0.0
 Identities = 717/727 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataagaaagccagctcggtcctgacagtgttttaaagaacagtgttcctctgcagtttc 60
           ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||
Sbjct: 792 tataagaaagccagctcggtcctgacagtgagttaaagaacagtgttcctctgcagcttc 733

                                                                       
Query: 61  tggctctgtcttcctcttttgaattccttttctgatttccctcagggatggactgtgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tggctctgtcttcctcttttgaattccttttctgatttccctcagggatggactgtgatc 673

                                                                       
Query: 121 tggaagtgtaagcaaataaattcattcctgccctaagctgcttgcagtctgagagtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tggaagtgtaagcaaataaattcattcctgccctaagctgcttgcagtctgagagtttta 613

                                                                       
Query: 181 tcccaacagaggggaactagaacatagctcctaagtctacatatccaaagactgtaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tcccaacagaggggaactagaacatagctcctaagtctacatatccaaagactgtaacca 553

                                                                       
Query: 241 tgacattcaggattagtgttctaacatgtgaatagaggaccagggttgcaggcacaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgacattcaggattagtgttctaacatgtgaatagaggaccagggttgcaggcacaaaca 493

                                                                       
Query: 301 atccacagaacaagagaaataaagaattctcctgaagagggaaggcaccttgcccaacat 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atccacagaacaagagaaacaaagaattctcctgaagagggaaggcaccttgcccaacat 433

                                                                       
Query: 361 ccagtatttttctcataattatctagaacagtgattctcaacctttccaatacttcaacc 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccagtatttttctcaaaattatctagaacagtgattctcaacctttccaatacttcaacc 373

                                                                       
Query: 421 ctttaatacagatcctcgtgtcgtgagttccccctccaaccataaaaatatttgtgttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 372 ctttaatacagatcctcgtgtcgtgagttccccctccaaccataaaattatttgtgttgc 313

                                                                       
Query: 481 tacttcataactgtagttttgctactgttatgaatcacagtataagtatttttggagata 540
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tactacataactgtagttttgctactgttatgaatcacagtataagtatttttggagata 253

                                                                       
Query: 541 gaggtttgccaaagggctcgatcgagatgcacaggttgagaaccttaaatctagagcctc 600
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 252 gaggtttgccaaagggctcgatggagatgcacaggttgagcaccttaaatctagagcctc 193

                                                                       
Query: 601 tggcaacaaagcagaaaattaatacagtagaacacagtgtctgcagtgggagaggagaca 660
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 192 tggcaacaaagcagaaaattaatacagtagaacacagcgtctgcagtgggagaggagaca 133

                                                                       
Query: 661 tggagatactggagcgatcaaggaaagacactaaaggtcttttctaaccaaggtggcggc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggagatactggagcgatcaaggaaagacactaaaggtcttttctaaccaaggtggcggc 73

                  
Query: 721 acagatg 727
           |||||||
Sbjct: 72  acagatg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1127
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1117
Effective search space:   800889
Effective search space used:   800889
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no313_f11.g1 MSMg01no313_f11.g1 CHROMAT_FILE:
MSMg01no313_f11.g1 PHD_FILE: MSMg01no313_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:55 2005
         (379 letters)



>mm_chr1_168110894_168111672
          Length = 779

 Score =  656 bits (339), Expect = 0.0
 Identities = 369/379 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactggttgcagaccaagttaaactaaacttggcctgattccttatgtaagaagctacaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tactggttgcagaccaagttaaactaaacttggcctgagtccttatgtaagaagctacaa 260

                                                                       
Query: 61  tctaactcaacaagtaaataaatagaaaacctaacaactgaggaattggccctataagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 261 tctaactcaacaagtaaataaatagaaaacctaacaactgaggaattggctttataagga 320

                                                                       
Query: 121 atagctggatcccagccatttacagccataggcattggccaatcacaggtagccaactgt 180
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 321 atagctggatcccagccatttacacccataggcgttggccaatcacaggtagccaactgt 380

                                                                       
Query: 181 ctagactacattcaggtgaagccaacaactgtgaccaacccgactccctttgtgcctgcc 240
           |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 381 ctagactatattcaggtgaagccaacaactgtgactaacctgactccctttgtgcctgcc 440

                                                                       
Query: 241 tccatctctgtgtcacctccttttttctcactagaaatgtaatttgcaagcgtgctgagc 300
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tccgtctctgtgtcacctccttttttctcactagaaatgtaatttgcaagtgtgctgagc 500

                                                                       
Query: 301 tgcagtagtctgttttgctgccagattctagaattgcaaataaaacccaattaagactgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcagtagtctgttttgctgccagattctagaattgcaaataaaacccaattaagactgc 560

                              
Query: 361 aaaactagatttgttgtga 379
           |||||||||||||||||||
Sbjct: 561 aaaactagatttgttgtga 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)