Query= MSMg01no313_f13.b1 MSMg01no313_f13.b1 CHROMAT_FILE:
MSMg01no313_f13.b1 PHD_FILE: MSMg01no313_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:56 2005
(706 letters)
>mm_chr1_137693185_137694291
Length = 1107
Score = 1303 bits (674), Expect = 0.0
Identities = 692/698 (99%), Gaps = 1/698 (0%)
Strand = Plus / Plus
Query: 5 gaattccc-atctttaatttaatcatatctgtgatttggctatataaaatattctattca 63
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccatctttaatttaatcatatctgtgatttggctatataaaatattctattca 264
Query: 64 cattgttgtgtttgcagaaccattatccacatggccacaggaagttctgcctggggactc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattgttgtgtttgcagaaccattatccacatggccacaggaagttctgcctggggactc 324
Query: 124 tggagagcttgtgattgctggctgtttctggctccatgtctgaggagaagctagacatag 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagagcttgtgagtgctggctgtttctggctccatgtctgaggagaagctagacatag 384
Query: 184 cctggaggctcttccatagctgcccctgtagaggtagaataggaagtgggtgacctattc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctggaggctcttccatagctgcccctgtagaggtagaataggaagtgggtgacctattc 444
Query: 244 ccggacagatgtgaactgaaaaggaggcgccctttactgtaagcaaggaggtcaggagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccggacagatgtgaactgaaaaggaggcgccctttactgtaagcaaggaggtcaggagag 504
Query: 304 aagcaacagaggcaccttgataagggcagtgattggggtagcagggcagagacatccgga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagcaacagaggcaccttgataagggcagtgattggggtagcagggcagagacatccgga 564
Query: 364 ttgaacccttagctaggctgagaaggactcctgctagagattgcatgttctaccagtggg 423
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 565 ttgaacccttagctaggctgagaaggactcctgctagagattgcagggcctaccagtggg 624
Query: 424 tggctctggaggtctctgtacccacttccatgcttggggaaactggagcttgtacaagca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggctctggaggtctctgtacccacttccatgcttggggaaactggagcttgtacaagca 684
Query: 484 cctcaggccatgacagacttagttttgagggtcatttttgaacgatatcaagagacagac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctcaggccatgacagacttagttttgagggtcatttttgaacgatatcaagagacagac 744
Query: 544 cccagagaagtctgtgggccagtgtacaaagccagaattggggccagagtgcaaagccaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccagagaagtctgtgggccagtgtacaaagccagaattggggccagagtgcaaagccaa 804
Query: 604 cattggagtcatgagcttgggtgggtgcgcacgcgcgcgcgcgcgagagagagagagaga 663
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 805 cattggagtcatgagcttgggtgggtgcgcacgcgcgcgcgcgcgcgagagagagagaga 864
Query: 664 gagagagagagagagagagagagagagagagagagaga 701
||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gagagagagagagagagagagagagagagagagagaga 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1107
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1097
Effective search space: 763512
Effective search space used: 763512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_f13.g1 MSMg01no313_f13.g1 CHROMAT_FILE:
MSMg01no313_f13.g1 PHD_FILE: MSMg01no313_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:56 2005
(380 letters)
>mm_chr1_137730222_137730998
Length = 777
Score = 580 bits (300), Expect = e-170
Identities = 356/400 (89%), Gaps = 40/400 (10%)
Strand = Plus / Minus
Query: 1 agagaatggaaggacctggggtcccaatcaaggttctcagcccaaccagagcagttacac 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agagaagggaaggacctggggtcccaatcaaggttctcagcccaaccagagcagttacac 338
Query: 61 cgtactccactgcctggatggcacatagctaccttccctgccccgcccaggtttacatta 120
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 c---ctccactgcctgggtggcacatagctaccttccctgccccgcccaggtttacatta 281
Query: 121 gccctcaattgcagataaagtccttctcaggacatacaggatgttccaggcaggtcttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gccctcaattgcagataaagtccttctcaggacatacaggatgttccaggcaggtcttca 221
Query: 181 gggcccattccctccac-------------------------------------ctctca 203
||||||||||||||||| ||||||
Sbjct: 220 gggcccattccctccacctcagcccagcaaaaagatgagatcagctgcaggaggctctca 161
Query: 204 gaggtaagccaggcctggatgctgaaatgtgagcacacgcagagtctgaggacctctgtc 263
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 160 gaggtaagccaggcctggatgctgaagtgtgagcacacgcagagtctgaggacctctgtc 101
Query: 264 ccctggactatagggcctaagacaaagggccttcacccaggacaaaaagacaggaggaac 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 100 ccctggactatagggcctaagacaaagggccttcacccaggacaaaaagacaggaagaac 41
Query: 324 tggctgcttctactccataaactaggggagcagggaccca 363
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 tggctgcttctactccataaactaggggagcagggaccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 777
Length adjustment: 9
Effective length of query: 371
Effective length of database: 768
Effective search space: 284928
Effective search space used: 284928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
