BAC Information

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BAC

Clone NameMSMg01-313H23
Chromosome1 (Build37)
Map Location 70,079,995 - 70,080,320
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313H23.T7 (MSMg01no313_h23.b1)MSMg01-313H23.TJ (MSMg01no313_h23.g1)
ACCAG435408AG435409
length1,2181,216
length of high quality
(start - end)
609 (90 - 698)326 (502 - 827)
definitionCHROMAT_FILE: MSMg01no313_h23.b1 PHD_FILE: MSMg01no313_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:15 2005CHROMAT_FILE: MSMg01no313_h23.g1 PHD_FILE: MSMg01no313_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCACTCCNNNNNCCACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGAGGAATACCCTTTGAAACACAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
TAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCC
AAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGANAC
TCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTT
GGGAACAAAACACCCATGGAAGGAGTTACAGAGACCGAGTTTGGAGCTGA
GATGAAAGGATGGACCATGTAAAGACTGCCATATCCAGNGATCCCCCCCA
TAATCAGCATCCAAACGCTGAACCCATTGCATACACTAGCAAGATTTTAT
TTGAAAGGACCCACATGTAGCTGTCTCTTGTGAAACCTATGCCGGGGCCC
CGCAAACACAGAAGTGGATGCTCCCCGCCCGGCTAATGGATGGACCATAG
GCCTCCCAATGGAGGAACCTATAAAAAAGTAGCCCAGGAACCTTAAGGGA
ACCTGCTCACCCCTAAAGGTGGAACAACATTTATTAGCCTAACCCGTTCC
CCCCGAAACTCCTTGAACTCCAGTCTCGCCATATATTTCCAAAAAAGGGC
CCCTATTGCGCCCCTCCCTGTGTAAAAAAAAAGGCCCCCTTGGGAATTTC
TCCAACCTTTATTTTGCC
NNNGGAATCAGGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGTGAACAAATGAGCCCATTGACCCTT
CTGAACCAATAATGAACTTTTGTAATCAATGCTGAACTGCTAAAGTTCTG
CTGCCAAGCAGTTGACCATGCCAAGTGGCACCTGTCCTAAGACATGAGCA
AGTACATTCAATGCCGCATCAGGATCACTGGCTACTTAACATTTATGTTA
AAAGCAGATTCTGCACTAGATGTAAGAAGAGACTATGACACTGAAGAAAT
GAACAAGCCAAAAAGGACAATGAACATCTAGAATTCAAACTAAAGTGCCT
GAAGGCAAGGTAGAGAAAAATGTCACTGTAACTTTGTCATGGAGCCTTTT
TCTTTTTCTTTCTTTTAAGAAAGAAAGAAGAGGAAAGACAAAACTGAAAA
TTTTTTTTTTCCCCCCCCGGGNTCTGCTTATCTGCTCACAAAAAAAAAGG
CAGGGTAAAGTCAAAGAACCTACAGCAAGTCAAATTCTACCACTTTGTGT
CCAAGAGTCTACCCATAACCAAGCAAATTTTAAACTGCTCTAAATGAAAT
TGCTGTTACATGGGGTATTTCTTTTTAATGAAAACAAATGGCAGTTTCAA
ATATAGTTCAACTTTATAGTTGATCTTTATAGGTATTTCTTTATGGAACC
TTGTGTGAGACAATAAGAAAAGCATAAAATCTCTTTGAAAAGAATGTGTG
CTTTTGAAAAGAGCACATCAAAATTTCAACAAAAATAAAAACACCATGAA
CAAAATTCAATGTTCAAACCTTTAAGACTCACACGTACAAACACAGATGA
GAGAGTACATAAGGAATGCTTTTATTGCTGCAGCTCTTTTAAAACTTATG
TATTACTATTTTAACAAGATTCCACTTAACTCATGTTTTAAAGCAATGCT
ATGAGGGATGTTCAGCTATTTACATTGTGTACAAGAACTCTGAAGTCCAG
GCTTAACAAAAAAATTTGCTTGAAACCCAAAATCTGAAGGTGAACTGGCA
TTCCCAGTCACCAAAAAAAATATTTCTTTTTCTTGAAAAATTTTTTACCA
AACAGAACCTCCAACCCTTGTTGTGAAAAAATGGGTTCCTTATAAACCTC
CCAAAAAAATGAATAAGTTTTAAAAAAAGGCTTCTAAAGGATTTTTAAAA
TTCCCCCCAAATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_h23.g1 MSMg01no313_h23.g1 CHROMAT_FILE:
MSMg01no313_h23.g1 PHD_FILE: MSMg01no313_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:15 2005
         (326 letters)



>mm_chr1_70079795_70080520
          Length = 726

 Score =  600 bits (310), Expect = e-176
 Identities = 322/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtaaagtcaaagaacctacagcaagtcaaattctaccactttgtgtccaagagtcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agggtaaagtcaaagaacctacagcaagtcaaattctaccactttgtgtccaagagtcta 467

                                                                       
Query: 61  cccataaccaagcaaattttaaactgctctaaatgaaattgctgttacatggggtatttc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 466 cccataaccaagcaaattttaaaatgctctaaatgaaattgctgttacatggggtatttc 407

                                                                       
Query: 121 tttttaatgaaaacaaatggcagtttcaaatatagttcaactttatagttgatctttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tttttaatgaaaacaaatggcagtttcaaatatagttcaactttatagttgatctttata 347

                                                                       
Query: 181 ggtatttctttatggaaccttgtgtgagacaataagaaaagcataaaatctctttgaaaa 240
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 346 ggtatttctttatggaactttgtgtaagacaataagaaaagcataaaatctctttgaaaa 287

                                                                       
Query: 241 gaatgtgtgcttttgaaaagagcacatcaaaatttcaacaaaaataaaaacaccatgaac 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 286 gaatgtgtgcttttgaaaagagcagatcaaaatttcaacaaaaataaaaacaccatgaac 227

                                     
Query: 301 aaaattcaatgttcaaacctttaaga 326
           ||||||||||||||||||||||||||
Sbjct: 226 aaaattcaatgttcaaacctttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)