BAC Information

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BAC

Clone NameMSMg01-313O04
Chromosome1 (Build37)
Map Location 51,036,725 - 51,037,380
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313O04.T7 (MSMg01no313_o04.b1)MSMg01-313O04.TJ (MSMg01no313_o04.g1)
ACCAG435684AG435685
length1,2921,253
length of high quality
(start - end)
812 (85 - 896)305 (514 - 818)
definitionCHROMAT_FILE: MSMg01no313_o04.b1 PHD_FILE: MSMg01no313_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:06 2005CHROMAT_FILE: MSMg01no313_o04.g1 PHD_FILE: MSMg01no313_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTTTTNNNNNNNGACAGTGGGCGCTAAGACTCACTAAGGGAGAGGA
TCCGCGGAATTCCATCTGTACTACCCACTATACTCTCCTCTGCCTTGAAG
CTAAGGGTGAAGGCAGCACTGGATGCACATACTCCTGCGCAACAGTAAAT
GCACTAGACTGGAGTATGTCAGAACATCAGCTTCCCACCACAGATGCATG
TAATAACAATTCCATTCTGCACTCACAACTATGTACTTTCACATGACTAT
AAGTTGATTCATCTATTGAACAAGTGATGCAATGAAGGCAAAATGCCACC
TAGCCCATCACTAACTGCGTTCAGCTTTTGTTCACTATGTGGTCTCTGCT
GTACTCCCTAATCCAAAAGACTCATCACAGAACAATTCCTTGTAAGTCTC
CGAAGCCAACATTTTGTTGCCATTCACCTTTTGTGCTGATGTTAGTAAGC
CCCACTTGTTTTGTTTATCTTGCATAAATAAAAATATACGATTAAAAATT
TAGTTGTGTAAATCTCTTCCAAATGTAAATTCAGTTAACCTATTATATTT
TTTAAAAAATACAGACAGGATAGTGAGACATAGACATTATTAATTATAAA
CTACAAGCTTACATTGACCAGAAAATTAATAGAAACTCTGGTGTAGCAAG
TGCCAGACATGTCCTAGATAATAGGGATCAATGTTGAAATCATCACAGTT
CATTTGTCTTAAGTTTTTATTGTGCATCTTGGACAACACATTCAACTACT
CCTTCCAACACTGTCCTGTCCAAGACTATTTACAAAGTTTAAGCAACAAA
CCTATGAAGCAGAGACCCGAGTGTGTGTGTGGTGTCTCCCATAGTGCACA
ATTAATTATTCCACAGCAGGACACAGAATAGCAATATCTTGCCTTTATGA
TACATGGACAGTTCTCTGCAACCCACTAAGTTTCCTTCTGGTTTGACTTT
ATTCCCCAAAGTGTCTCAGACTTAAGGAACTGGTAATGTTCCCTTCTACA
CAGTCCACTGTGCTAAACAGGGCCCCACCGGTTAATTTTAAATTGGCTCC
TATGAAAAACCCCCCAACATTAACAAAAAGGGTGTGGGCAAAAAACTTTG
CTCTGGGATTCCCCTTGGGAGCCTCCCCTTTTTTTGAGATCCACGACCCC
CCTTAATCCCACCACCTGTGTAAAAAAACTCACCTCCCCCTCTTCGGATG
TCCCAATCAGTTTTCTTCTTTTATAAAAAAAAATAAACAGCTCAACCATN
CTTTTTCCTTCTCTATAGTCTCTCTCCTCACAATATAAAAAC
NTTTTTAAANNNNNNNNATAGATGCNAGCCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACAGTCTCAATG
GCTAACATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGATACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGATTTTTTTTACACCCCCCTCAACAGAGGAATGCATAC
AAAAAAAAAGGAACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTTCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCAC
TGTTAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATAT
AATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGAA
ACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTAC
AGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGC
CATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTG
CATACACTAGCAAGATTTTATTGAAAGGTCCCAGATGTAGCTTTCTCTTG
TGAGACTATGCCGGGGCCTACCAACACAGAAGTGGATGCTCCCCGTCAGC
TAATGGAAGGATCCTAGGGTTCCCAAGGAGGAGCTTAAAAAGTTACCCAG
GAACTAAGGGATCTGCCACCCCTTTTGGGGAAAACTTTTTAAATAACCAA
ACCCCCGAATCTTGACCCACTTGATAAAAATCAAAAAAGGCCCACCCCCC
TTCCTGAAAAAAAGCCCTTGGAACTCCAATTTTTTGCCCCCCCCCGGGAA
CCCCCGCCCACAAGGAAAGGTGGCCCGCATAGCTCCCCTNCCTCCTCCCC
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_o04.b1 MSMg01no313_o04.b1 CHROMAT_FILE:
MSMg01no313_o04.b1 PHD_FILE: MSMg01no313_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:06 2005
         (812 letters)



>mm_chr1_51036725_51037936
          Length = 1212

 Score = 1191 bits (616), Expect = 0.0
 Identities = 646/656 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctctgccttgaagctaagggtgaaggcagcactggatgcacatactcctgcgcaaca 60
           |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||
Sbjct: 656 ctcctctgccttgaagctaagggtgaaggcagtaaaggatgcacatactcctgcgcaaca 597

                                                                       
Query: 61  gtaaatgcactagactggagtatgtcagaacatcagcttcccaccacagatgcatgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gtaaatgcactagactggagtatgtcagaacatcagcttcccaccacagatgcatgtaat 537

                                                                       
Query: 121 aacaattccattctgcactcacaactatgtactttcacatgactataagttgattcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aacaattccattctgcactcacaactatgtactttcacatgactataagttgattcatct 477

                                                                       
Query: 181 attgaacaagtgatgcaatgaaggcaaaatgccacctagcccatcactaactgcgttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 attgaacaagtgatgcaatgaaggcaaaatgccacctagcccatcactaactgcgttcag 417

                                                                       
Query: 241 cttttgttcactatgtggtctctgctgtactccctaatccaaaagactcatcacagaaca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cttttgttccctatgtggtctctgctgtactccctaatccaaaagactcatcacagaaca 357

                                                                       
Query: 301 attccttgtaagtctccgaagccaacattttgttgccattcaccttttgtgctgatgtta 360
           |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 356 attccttgtaagtctctgatgccaatattttgttgccattcaccttttgtgctgatgtta 297

                                                                       
Query: 361 gtaagccccacttgttttgtttatcttgcataaataaaaatatacgattaaaaatttagt 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 296 gtaagccccacttgttttgtttatcttgcataaataaaaatatactattaaaaatttagt 237

                                                                       
Query: 421 tgtgtaaatctcttccaaatgtaaattcagttaacctattatattttttaaaaaatacag 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 236 tgtgtaaatctcttccaaatgtaaaatcagttaacctattatattttttaaaaaatacag 177

                                                                       
Query: 481 acaggatagtgagacatagacattattaattataaactacaagcttacattgaccagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 acaggatagtgagacatagacattattaattataaactacaagcttacattgaccagaaa 117

                                                                       
Query: 541 attaatagaaactctggtgtagcaagtgccagacatgtcctagataatagggatcaatgt 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 116 attaatagaaactctggtgtagcaagtgccagacatgtcctagaaaatagggatcaatgt 57

                                                                   
Query: 601 tgaaatcatcacagttcatttgtcttaagtttttattgtgcatcttggacaacaca 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  tgaaatcatcacagttcatttgtcttaagtttttattgtgcatcttggacaacaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 812
Length of database: 1212
Length adjustment: 10
Effective length of query: 802
Effective length of database: 1202
Effective search space:   964004
Effective search space used:   964004
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)