Query= MSMg01no315_d12.b1 MSMg01no315_d12.b1 CHROMAT_FILE:
MSMg01no315_d12.b1 PHD_FILE: MSMg01no315_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:37 2005
(635 letters)
>mm_chr1_88645222_88646260
Length = 1039
Score = 1062 bits (549), Expect = 0.0
Identities = 576/587 (98%), Gaps = 4/587 (0%)
Strand = Plus / Minus
Query: 53 taagaatcaagggagaaagtggtcatgggatgctgtttcttgggataatccaaagggaac 112
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 1039 taagaatcaagggagaaagtggtcatgggatgctgattcctgggataatccaaagggaac 980
Query: 113 ctggagtaaatgactgaattgatttgtaaataacacaggctgccagcttgtaccccaaga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 ctggagtaaatgactgaattgatttgtaaataacacaggctgccagcttgtaccccaaga 920
Query: 173 ttgacttcgagtcgtttttttccatttcaaacaccccttctctcaggaacccctttctaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ttgacttcgagtcgtttttttccatttcaaacaccccttctctcaggaacccctttctaa 860
Query: 233 gcaaaagctggtccctggcaaaatccaagtttctaatatagtctaagtccctaaaggact 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gcaaaagctggtccctggcaaaatccaagtttctaatatagtctaagtccctaaaggact 800
Query: 293 tggctactgcctaactccacctttgctccattaagtctccaaaggctgcttccttttcat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tggctactgcctaactccacctttgctccattaagtctccaaaggctgcttccttttcat 740
Query: 353 cctctaaaacatcaagtcccccccgcgctgttcttctgcttgctgatctctttacctata 412
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 739 cctctaaaacatcaagtcttctccgtgctgttcttctgcttgctgatctctttacctata 680
Query: 413 ttcttttccaaagctgaaattagctgctcacttttgttctttagctctcacctacaggat 472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 679 ttcttttccaaagctgaaattagctgctcacttttgttctttagatctcacctacaggat 620
Query: 473 gatctcacagagacttccctaaccaatatgtgcagtggttccttctatctattctctctc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gatctcacagagacttccctaaccaatatgtgcagtggttccttctatctattctctctc 560
Query: 533 ctctttctcttggaacattaatgacctacaatttccttcacttttacagttatttttg-- 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctctttctcttggaacattaatgacctacaatttccttcacttttacagttatttttgcc 500
Query: 591 --ccagcccagtgacttttctagtgctcattcccaaatgcttgacat 635
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taccagcccagtgacttttctagtgctcattcccaaatgcttgacat 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1039
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1029
Effective search space: 643125
Effective search space used: 643125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_d12.g1 MSMg01no315_d12.g1 CHROMAT_FILE:
MSMg01no315_d12.g1 PHD_FILE: MSMg01no315_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:37 2005
(342 letters)
>mm_chr1_88602552_88603290
Length = 739
Score = 627 bits (324), Expect = 0.0
Identities = 335/340 (98%), Gaps = 3/340 (0%)
Strand = Plus / Plus
Query: 1 ggggctgaagagatggctcaacttttaagggctagactcctaaccaaacatataaaagag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ggggctgaagagatggctcaacttttaagggctagactcctaaccaaaaatataaaagag 260
Query: 61 atcattatggctagttgattagaagtaattttaatcagtactactgcttggaaaccagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcattatggctagttgattagaagtaattttaatcagtactactgcttggaaaccagtt 320
Query: 121 tttgtgactttttttttaaactcttttttttttttttaaagttgtagtaaaccacataat 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tttgtgactttttttttaaactcttttttttttt---aaagttgtagtaaaccacataat 377
Query: 181 ataaagcctactgtcaggctggggattagcttagttggtgaagtgtttgcagcacacgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ataaagcctactgtcaggctggggattagcttagttggtgaagtgtttgcagcacacgag 437
Query: 241 gacctgagatccatatcccaagcagccatgtaaaacacacacctggtgtcatgtgcttgt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 438 gacctgagatccatatcccaagcagccatgtaaaacccacacctggtgtcatgtgcttgt 497
Query: 301 aatagctgtgctcaggagacagaaagatccttgtgttctg 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatagctgtgctcaggagacagaaagatccttgtgttctg 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 739
Length adjustment: 9
Effective length of query: 333
Effective length of database: 730
Effective search space: 243090
Effective search space used: 243090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
