NNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACACTATCCTAAGTAGTTCTATCACAGTTGAGTTGTAAAA
CAACATCATAAATCAAAATGCACATAACTTATTGTATTAGCTAGGGTTTT
ACTCCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAGAACAACAT
TTAATTGAGGGTGGCTTACAGGTTCAGAGGTTCAGCTCAGTATCATCAAG
GCAGGAGCATAGCAGCATCCAGGCAGGTATGGTACAGGAGGAGCTGAAAG
TTCTACAACTTTATCTGAAGGCTGCTAGTGGAAGACTGGCTTCCAGGCAG
GTAGGAGGAGGGTCTTAAAGCCCACGCCTACAGTGACATACCTACTCCAA
CAAGGCCACACCTCCATATACCCCCACTCCCTGGGCCAGAACATATTCAA
ATCATGACACTTATCAAATGTGAGTAATGGTTTGGCTATAAAGTAAGTAC
TCCTGCTACCCCCCAAAAGGACTTCTATGTTGAAAGCTAGGTTTCTTGCT
GCTGCAGTCAACCATTAAGAGTTGATTGTATCTAGCCTTCTTATACAACA
AGTTCCAGGACAGCCAAGGCTACACAAAAAAAAGCCCTGTCTCTAAAAAC
AAAAAAATGAAAACTGAGTTGATTGTACTGTGAAGACTTTGACAGCATCA
CTATGTTAATGTATCTGAG

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTATACTGGGGCATCTATCTAG
CCATCATAGGACCAAGGACCTCTCCACCCAATGAAGCCTGGGAGCAAGCC
ATTGTAGCAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATGGGTCT
CTCCATGTGTATTCCTTGGAGCTGGGGGGGGGGGCAGGGGAGGGGAAGGA
TGGTTCTGGTTGGTTGACCTCTGCCTTCTTTTCCTCTCCCTCCTTTTTCA
TTACTCNCCCCCCNCTTTTTTTTTTTTAACCCCACCTCCACCTTTTTATC
CCCCCCTACCTCTTTTCCCTCCCCCCCCTGCCCGTTATATATTATTTCAC
CATTTTATTTTCCTTTTTTGTCTCCCCCCCCCCAATAAATTNTATAAATT
TGTTAGTGTATCACCTTAATTTTCACCACCACCCATTTTTTCCCCCACTT
TTCCCTCGCCATTATGATCTTATTATAACATTCTCTCGATCCCCCCATTC
CATGATCTTTTTCTGTTATTCCTCTTTCCTATTTTTTATCCCCATCCTCT
CTTTTTATTTCCCTCCCCTTTTTTATCTTTTTCCCCTTTTTTCTTATCAC
CCCCGCTTATTCTCCCACCGTATACCCACCTATCTCCTATTTCCCGCTCC
TCTATAGGGTGTGTGCGTACCTGTACCCTTTTTCCCTCTTTTCTGTTATC
TCCATGATCCCCTATCTCTTTTCCTG

Query= MSMg01no315_e15.b1 MSMg01no315_e15.b1 CHROMAT_FILE:
MSMg01no315_e15.b1 PHD_FILE: MSMg01no315_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:42 2005
         (670 letters)



>mm_chr1_30948779_30949848
          Length = 1070

 Score = 1064 bits (550), Expect = 0.0
 Identities = 585/602 (97%), Gaps = 12/602 (1%)
 Strand = Plus / Minus

                                                                        
Query: 73   acataacttattgtattagctagggttttactcctgtgaacagacaccatgaccaaggca 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 acataacttattgtattagctagggttttactcctgtgaacagacaccatgaccaaggca 1011

                                                                        
Query: 133  actcttataagaacaacatttaattgagggtggcttacaggttcagaggttcagctcagt 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 actcttataagaacaacatttaattgagggtggcttacaggttcagaggttcagctcagt 951

                                                                        
Query: 193  atcatcaaggcaggagcatagcagcatccaggcaggtatggtacaggaggagctgaaagt 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  atcatcaaggcaggagcatagcagcatccaggcaggtatggtacaggaggagctgaaagt 891

                                                                        
Query: 253  tctacaactttatctgaaggctgctagtggaagactggcttccaggcaggtaggaggagg 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  tctacaactttatctgaaggctgctagtggaagactggcttccaggcaggtaggaggagg 831

                                                                        
Query: 313  gtcttaaagcccacgcctacagtgacatacctactccaacaaggccacacctccatata- 371
             |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| 
Sbjct: 830  atcttaaagcccacgcctacagtgacacacctactccaacaaggccacacctccaaatag 771

                                                                        
Query: 372  ---cccccactccctgggccagaacatattcaaatcatgacacttatcaaatgtgagtaa 428
               |    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  tggc----actccctgggccagaacatattcaaatcatgacacttatcaaatgtgagtaa 715

                                                                        
Query: 429  tggtttggctataaagtaagtactcctgctaccccccaaaaggacttctatgttgaaagc 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  tggtttggctataaagtaagtactcctgctaccccccaaaaggacttctatgttgaaagc 655

                                                                        
Query: 489  taggtttcttgctgctgcagtcaaccattaagagttgattgtatctagccttcttataca 548
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 654  taggtttcttgctgctgcagtcaaccattaagagttgattgtatctagctttcttataca 595

                                                                        
Query: 549  acaagttccaggacagccaaggctacacaaaaaaaagccctgtctctaaaaacaaaaaaa 608
            |   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 594  a---gttccaggacagccaaggctacacaaaaaaa-gccctgtctctaaaaacaaaaaaa 539

                                                                        
Query: 609  tgaaaactgagttgattgtactgtgaagactttgacagcatcactatgttaatgtatctg 668
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 538  tgaaaactgagttgattgtactgtgaagacattgacagcatcactatgttaatgtatctg 479

              
Query: 669  ag 670
            ||
Sbjct: 478  ag 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)