Query= MSMg01no316_f03.b1 MSMg01no316_f03.b1 CHROMAT_FILE:
MSMg01no316_f03.b1 PHD_FILE: MSMg01no316_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:02 2005
(649 letters)
>mm_chr1_79352239_79353287
Length = 1049
Score = 739 bits (382), Expect = 0.0
Identities = 406/414 (98%)
Strand = Plus / Minus
Query: 5 gaattctatttcatcactattttgtaattggaacctttgaccatttttcttctacttgtt 64
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaattgtatttcatcattattttgtaattggaacctttgaccatttttcttctacttgtt 359
Query: 65 ttagacacagatgtattattaaaacaatactaattagtcatactgttcatcataggacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttagacacagatgtattattaaaacaatactaattagtcatactgttcatcataggacac 299
Query: 125 taggacttatttcttctatctgtttttatgtgtaccttatctaactctttattgatcctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 taggacttatttcttctatctgtttttatgtgtaccttatctaactctttattgatcctt 239
Query: 185 gccaaatttctatttaaaaacacatttcttgctaattctttgatgatttcttacatacat 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gccatatttctatttaaaaacacatttcttgctaattctttgatgatttcttacatacat 179
Query: 245 acaatgtattttgatcatatccatcaccctcccattttccccactaacctctctccagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acaatgtattttgatcatatccatcaccctcccattttccccactaacctctctccagta 119
Query: 305 tgtctcacatctcccaacctcttgtcctttgttaataattcattgagtgtggagagccgt 364
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 118 tgtctcacatctcccaacctcttgtccattgtttctaattcattgagtgtggagagccgt 59
Query: 365 gcagcgagcaatcgtgtgcgtgccgccagtaatcactgtggagagccgtgctgc 418
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 58 gcagcgagcaatcgtgtgcatgccgccagtaatcactgtggagagccatgctgc 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_f03.g1 MSMg01no316_f03.g1 CHROMAT_FILE:
MSMg01no316_f03.g1 PHD_FILE: MSMg01no316_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:02 2005
(656 letters)
>mm_chr1_79296414_79297470
Length = 1057
Score = 1122 bits (580), Expect = 0.0
Identities = 639/661 (96%), Gaps = 5/661 (0%)
Strand = Plus / Plus
Query: 1 atggtgtctctataatctttatattcagcagcttactatgtagcagatcggatgtgccat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atggtgtctctataatctttatattcagcagcttactatgtagcagattggatgtgccat 260
Query: 61 cacaaagccctgctccaccaaccatgaagcacatgcatcaacacatgctaacgcatacct 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tacaaagccctgctccaccaaccatgaagcacatgaatcaacacatgctaacgcatacct 320
Query: 121 cagctccatgagcctagaaaacgagcttttccattccatacttgctttctatggaatcct 180
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 caactccgtgagcctagaaaacgagcttttccattccatactttctttctatggaatcct 380
Query: 181 agaggagaaagggaaacagtggaaagagaaaagaagaataaacacaaggtagatctgtgc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggagaaaaggaaacagtggaaagagaaaagaagaataaacacaaggtagatctgtgc 440
Query: 241 tctttggaagacctagactaccaagaccacagtttcagaaggttgtggaggttcttggaa 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 441 tctttggaagacctagactaccaagaccacagtttcagaaggttgtgggggttctttgca 500
Query: 301 aacagcaagaacagaagaacaaatacagactgtgggaggcacaacagccaagggcacagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagcaagaacagaagaacaaatacagactgtgggaggcacaacagccaagggcacagt 560
Query: 361 tgcaa-cctctctcttccaggaattctctgcttactgaggaggcagaaataataaataat 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaagcctctctcttccaggaattctctgcttactgaggaggcagaaataataaataat 620
Query: 420 accattataatgattgaatgttaatctccacattttctctgtatgttaaatgtacatgca 479
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 actattataatgattgaatgttaatctccacattttctctgtgtgttaaatgtacatgca 680
Query: 480 gagatgtccagatggggctttgtctc----cctcattatttggctagttcaccttcagat 535
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 681 gagatgtccagatggggctctgtctctcttcctcattatttggctagttcaccttcagat 740
Query: 536 atgtgtatattttagaaagtttctactgtattagcttttaatactacctctcanatgccc 595
||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 741 atgtgtatattttaggaagtttctactgtattagcttttagtactacctctcaaatgccc 800
Query: 596 ctgaattttagctgcctctccccatatttcctgcctcatcaccctcttctctcctcctcc 655
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 801 ctgaattttagctgcctctccccatatttcctgcctcatcagcctcttctctcctcctcc 860
Query: 656 t 656
|
Sbjct: 861 t 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space: 676362
Effective search space used: 676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
