Query= MSMg01no316_k05.b1 MSMg01no316_k05.b1 CHROMAT_FILE:
MSMg01no316_k05.b1 PHD_FILE: MSMg01no316_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:26 2005
(684 letters)
>mm_chr1_78822385_78823468
Length = 1084
Score = 1131 bits (585), Expect = 0.0
Identities = 670/727 (92%), Gaps = 47/727 (6%)
Strand = Plus / Plus
Query: 4 ggaattcagtctattatcattccaaactatttgggtgtaagatttttttatagtggcaca 63
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 158 ggaattcagtctattatgattccaaattatttgggtgtaagatttttttatagtggcaca 217
Query: 64 ctttaaatatacagaaatatcataatgaagtcaatatatcatcatatctgattatgctta 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttttaaatatacagaaatatcataatgaagtcaatatatcatcatatctgattatgctta 277
Query: 124 atttctgggtgttaaaaattgattaaaatt--at-------------------------- 155
|||||||||||||||||||||||||||||| ||
Sbjct: 278 atttctgggtgttaaaaattgattaaaattcaatacacacacacacacacacacacacac 337
Query: 156 --------------atatata----tcatacccaaattaccttaaaatcaattttttgaa 197
||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 338 acacacacacacacatatatattggtcatacccaaattaccttaaaatcgattttttgaa 397
Query: 198 taatttggaataattctgttagaatagttgatgtcataggattcatagtcatttctttgt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 taatttggaataattctgttagaatagttgatgtcataggattcatagtcatttctttgt 457
Query: 258 gagtcttcctaataatacaaatacattattaagagcaaccaaagaatgtatagttcaggt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gagtcttcctaataatacaaatacattattaagagcaaccaaagaatgtatagttcaggt 517
Query: 318 tggcctattgaaatgcttagaaggtactgtcttgattcccttcattgaagtgggaacacc 377
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 518 tggcctattgacatgcttagaaggtactgtcttggttcccttcattgaagtgggaagacc 577
Query: 378 catacccacccactatgggtggaaccattccctaggcagggaatcttgagccatataaga 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 catacccacccactatgggtggaaccattccctaggcagggaatcttgagccatataaga 637
Query: 438 gtggagagtgtcctcagataatgtctgagtcctgttttgtttgaacttgtctatagattt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtggagagtgtcctcagataatgtctgagtcctgttttgtttgaacttgtctatagattt 697
Query: 498 ctccacaaatatatctaaaaaaatgtatctaaaaatttatgactttctattttctattac 557
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 698 ctccacaaatatatctaaaaaa-tgtatctaaaaatttatgactttctattttctattac 756
Query: 558 tataaaaagctcatcaaattgttaccacatcaaaacacagaacttggggtaacctaaatc 617
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 757 tataaaaagctcatcaaattgttaccacatcaaaacacagaatttggggtaacctaaatc 816
Query: 618 tgtgtttccaggccaggattactctacttggcttcagaacaaatggtcttttatcccttt 677
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 817 tgtgtttccaggccagggttactctacttggcttcagaataaatggtcttttatcccttt 876
Query: 678 tgaggtg 684
|||||||
Sbjct: 877 tgaggtg 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_k05.g1 MSMg01no316_k05.g1 CHROMAT_FILE:
MSMg01no316_k05.g1 PHD_FILE: MSMg01no316_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:26 2005
(582 letters)
>mm_chr1_78977540_78978523
Length = 984
Score = 1079 bits (558), Expect = 0.0
Identities = 574/580 (98%), Gaps = 2/580 (0%)
Strand = Plus / Minus
Query: 1 actctgtagacctggatgggctctaactcagagatctgcctgcctctgcctcactgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 actctgtagacctggatgggctctaactcagagatctgcctgcctctgcctcactgagtg 812
Query: 61 ctggttcataaggcatgtgccaccaccaccccacaatagttttaaatggaggaaagtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctggttcataaggcatgtgccaccaccaccccacaatagttttaaatggaggaaagtgtt 752
Query: 121 gactttatgttgtaaaaagtgataacattgtcccctttaaattcaatttatttaaaaaga 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 751 gactttatgttgtaaaaagtgataacattgtcccctttcaattcaatttatttaaaaaga 692
Query: 181 ataaaaaatgttagaaaaatctttacgtgaacactatgaaatatacttttctgtattcaa 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 691 ataaaaaatgttagaaaaatctttacttgaacactatgaaatatacttttctgtattcaa 632
Query: 241 gaaactaacagccaaaacaccttggaattgattttgagattgtctggagattctaaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaaactaacagccaaaacaccttggaattgattttgagattgtctggagattctaaaaca 572
Query: 301 atcagttagttaccaagtcatcaaactctgagaagacaattaccctgggaacttaaggaa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 571 atcagttagttaccaagtcatcaaactctgagaagacaattaccttgggaacttaaggaa 512
Query: 361 gagatggagtcccaagagctgagatggatgtagggctttgaatctcaccagagtcttact 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 511 gagatggagtcccaagagctgagatggatgtaggtctttgaatctcaccagagtcttact 452
Query: 421 agttagagaaagagaaaacggtcttactcacactcaaatgtccatcatctgga--aaaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 451 agttagagaaagagaaaacggtcttactcacactcaaatgtccatcatctggagaaaaaa 392
Query: 479 aaaagttcctagccttgaataaatttgcactacatttttccataagtctgggctctgata 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaaagttcctagccttgaataaatttgcactacatttttccataagtctgggctctgata 332
Query: 539 catgagggacattctaaggagaaaatggagggtggacctc 578
||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 catgagggacattctaaggagaaaatggagggtggacctc 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space: 557128
Effective search space used: 557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
