BAC Information

Click to search

BAC

Clone NameMSMg01-317C11
Chromosome1 (Build37)
Map Location 97,874,283 - 97,874,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317C11.T7 (MSMg01no317_c11.b1)MSMg01-317C11.TJ (MSMg01no317_c11.g1)
ACCAG437303AG437304
length846715
length of high quality
(start - end)
347 (157 - 503)637 (79 - 715)
definitionCHROMAT_FILE: MSMg01no317_c11.b1 PHD_FILE: MSMg01no317_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:07 2005CHROMAT_FILE: MSMg01no317_c11.g1 PHD_FILE: MSMg01no317_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATAAAAAAAAAAAATCGAAAAAAAAAAAAAAAAATAAAAAAAAATTAAA
AAAAAAAAAGAAAAAAAAACACCNNANNNNTTATNNNNNTTTCTAAATTG
GGCGCTATAGACTCACTATAGTCAAGGACCGCGGAATCAGTTCAGATAGC
AATGAAAGCAACATCACCTGTCTGAGATTAAATTGTAATGCTATTGATAT
AATTGGTCCCAAATAGAACAGGATGATTCCAAAATGGTAGTAATAATCGT
GTGGGTGATTGTTAATAACTTTACTTTTTAAGTTATCTATAGCTTCAAAG
GAAGTGATTGAATCATCTACCGAACATAATCACTAATACCGACTTTGATC
TTTAATTTGGAATTTGCCTACAATCAACTCAGCATTTCAACTTGCCTGTA
TTCAAGAGATGTCTAATTCACTTTCAGGCTTCTTTTTAATTTTTATTTTT
CTTGATTTTGAAATTATAATTTCTTCATTACTCTCTCTCTCCTGTTCTTC
TAACACTACCCATATAAATCTAATTGCTCTCTTTCAAATTGATGGCCTCT
TTTTCCTTAATTGTTATTACAGCCATGTGTGTTATCTTTCAATATATTAC
CTACCACTATTCAATATCTGTCTCATAAAGTATTTCCTCTAGTTTTCAGT
AAAGCTTCACTATGTGTAGGAAAATAAATTGAACCTAATATGTATTTTCT
TATACCTGAAGATGTTGATAACTTTCCTTTTCTACTCATGTAAGGAAGAA
ATGCAAGTTGATGCAATTTATCAATTGGGTTGGGTGAGATATATTGTTAC
TGTGCTATTATCAATTTTACATATTCGAACAATCAAAATGTGTCCC
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGGGGAATACTGAATGG
CTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAACCATCATAGAAATG
CAAATAAAAACAACCCTGAAATTCCATCTCACACCAGTCAGAATGGCTAA
GATCAAAAAATCAGGTGACAGCAGATGCTGGCGAGGACATGGAGAAAGAG
GAACAATCCTTCATTGTTGGTGGGATTGCAAGCTGGTACAACCACTCTGG
ATATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGA
TCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTA
AGAAGGACACATGCTCCACTACGCCCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATAAAA
AATATGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGGATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCATG
AGTGAGGTAACCCAATCACAAAGGAACTCAAATGATATGTTCTCACTGGT
AAGTGGATATTAGCCCAGAAACTTAGTATAGCGAGATATAAGATACAATT
TGCAAAACACATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_c11.b1 MSMg01no317_c11.b1 CHROMAT_FILE:
MSMg01no317_c11.b1 PHD_FILE: MSMg01no317_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:07 2005
         (347 letters)



>mm_chr1_97874083_97874829
          Length = 747

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaacatcacctgtctgagattaaattgtaatgctattgatataattggtcccaaatag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 545 agcaacatcacctgtctgagattaaattgtaatgctattgatataattggtaaaaaatag 486

                                                                       
Query: 61  aacaggatgattccaaaatggtagtaataatcgtgtgggtgattgttaataactttactt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 485 aacaggatgattccaaaatggtagtaataatcctgtgggtgattgttaataactttactt 426

                                                                       
Query: 121 tttaagttatctatagcttcaaaggaagtgattgaatcatctaccgaacataatcactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 425 tttaagttatctatagcttcaaaggaagtgattgaatcatctaccaaacataatcactaa 366

                                                                       
Query: 181 taccgactttgatctttaatttggaatttgcctacaatcaactcagcatttcaacttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taccgactttgatctttaatttggaatttgcctacaatcaactcagcatttcaacttgcc 306

                                                                       
Query: 241 tgtattcaagagatgtctaattcactttcaggcttctttttaatttttatttttcttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgtattcaagagatgtctaattcactttcaggcttctttttaatttttatttttcttgat 246

                                                        
Query: 301 tttgaaattataatttcttcattactctctctctcctgttcttct 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttgaaattataatttcttcattactctctctctcctgttcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)