BAC Information

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BAC

Clone NameMSMg01-317G02
Chromosome1 (Build37)
Map Location 11,990,798 - 11,991,086
singlet/doubletsinglet
Overlap genenone
Upstream geneC030045D06Rik, A830018L16Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317G02.T7 (MSMg01no317_g02.b1)MSMg01-317G02.TJ (MSMg01no317_g02.g1)
ACCAG437464AG437465
length710713
length of high quality
(start - end)
290 (74 - 363)185 (123 - 307)
definitionCHROMAT_FILE: MSMg01no317_g02.b1 PHD_FILE: MSMg01no317_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:23 2005CHROMAT_FILE: MSMg01no317_g02.g1 PHD_FILE: MSMg01no317_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGC
GGAATTCACTATATTCCCAAAGCACTAATGTCTGGGGCAAAGCTTTGGCA
GAGGGCCAATTTGCATTTATCCCCACACAATGACCACATTGATAGAGAAC
CATTTCTGCTTTGGAAACCATGAGTGCAGTTTTAATACATACAGAGGAGA
CTGCTTTAGGACAGTTAGCTGGTAGGCAAACGTCATCAGTATCGATGGCA
TCTCAAGCAAGGTGGCTAAACCTTGAAAATTGGCAGATCATTAGACCTAT
CTCTCTGGTTATAAGCACATAATCAATAGCAAATATTCTGGAACCTCTAA
CATTTGCATTGATCATCGTTGAAAGGAAAACAGTGTGAGCAGTGTGCTAT
GTCATGTCCAGTTCACACCAAAATGAGGAGGAAATCATATGGTAATGAAC
GTATGAAAGAATAATATGGCAATAAGTTAAAGATATAGTCATGATTTGGT
ATATTTAAAAACAATAGAAGGCAGCCCCTGCCTATTGACTCTGTGTACAT
TAATTGGATTTCAAGTTTTAAGAGTATAATATGTATTTGAGAATTGCTCT
TTCCATGTCTTTGAAGAATTCCGTCGGCATTTTGATGTGGATTGCATTGC
AACCATAGATTGCCTTGGATAGTTTTTACTATGTTAATTCTGGGAACCCA
TGAGCACGGG
TTTCGATGAAGTGGGAGGCCTGGAGGCCGCCGGTTCCCACNCGTGGGGNG
AACNANAGATTTTCCAGCAGGATCTCNCANGAGGAAACAGAAGGGCTGAG
AAGCACCTGAAAAAATGCCCCGCATCCTTAATCATCAGAGAAATACAAAT
CAAAACAACCCTGAGATTCCATCTCATACCAGTCAGAATGGTTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACA
TTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGAGGCTCCTTTTTTTTTGGACATACTACTACAGGAGGATCCCGC
AATACCTCTCTTGGGCATATATCCAGAATATGTTCCAACAGGTAAGAAGG
ACACATGCTCCACTACCGCCATAGAAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCGAAAATGTG
GTACATTTACACAATGGAATATTACTCAGCTATTAAAAAGAATGAATTTA
TGAACTTCCTAGTGTCCTCGTTGGTACTGGCGGGCATCTTCCTGAGTGAA
GCAACACAATTTCCAAAGAACTTCAAACGATACGTACTCCACTGATAAGC
GGGTTTTTATTCCCAGAAATTTAGCATCACCCGAGATTATAAGAGACAAA
TCTGTAAAAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_g02.b1 MSMg01no317_g02.b1 CHROMAT_FILE:
MSMg01no317_g02.b1 PHD_FILE: MSMg01no317_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:23 2005
         (290 letters)



>mm_chr1_11990598_11991287
          Length = 690

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaatgtctggggcaaagctttggcagagggccaatttgcatttatccccacacaatga 60
           |||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||
Sbjct: 201 actaatgtctggggcaaaactttggcagagggccaatttgcatttagcctaacacaatga 260

                                                                       
Query: 61  ccacattgatagagaaccatttctgctttggaaaccatgagtgcagttttaatacataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacattgatagagaaccatttctgctttggaaaccatgagtgcagttttaatacataca 320

                                                                       
Query: 121 gaggagactgctttaggacagttagctggtaggcaaacgtcatcagtatcgatggcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggagactgctttaggacagttagctggtaggcaaacgtcatcagtatcgatggcatct 380

                                                                       
Query: 181 caagcaaggtggctaaaccttgaaaattggcagatcattagacctatctctctggttata 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 caagcaaggtggctaaaccttgaaaactggcagatcattagacctatctctctggttata 440

                                                            
Query: 241 agcacataatcaatagcaaatattctggaacctctaacatttgcattga 289
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcacataagcaatagcaaatattctggaacctctaacatttgcattga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)