BAC Information

Click to search

BAC

Clone NameMSMg01-317G04
Chromosome1 (Build37)
Map Location 180,112,186 - 180,112,624
singlet/doubletsinglet
Overlap genenone
Upstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262
Downstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317G04.T7 (MSMg01no317_g04.b1)MSMg01-317G04.TJ (MSMg01no317_g04.g1)
ACCAG437468AG437469
length741714
length of high quality
(start - end)
438 (71 - 508)521 (82 - 602)
definitionCHROMAT_FILE: MSMg01no317_g04.b1 PHD_FILE: MSMg01no317_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:23 2005CHROMAT_FILE: MSMg01no317_g04.g1 PHD_FILE: MSMg01no317_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCG
CGGAATTCAGCCTTTACTGATGAATCTAAGCAGAGCATGAATCATAGGGA
ACCATTAGGAGCACAGGCGACCTCCCAAATAGTCCCCAGGATTGGTCAGA
AAGGAGTCCAGTAACTTGGAAGGCCTTAGTCTGCATTTCAGTCACTCCCT
TGGTGGGGGGTGGCAGAGCTTTCTATAAGCATAAGCAAACACTAGTCAAC
AGGTGTTTGAGGAAGGAAACATTCATTTTTCACTCAGAGTTTGAGAGGTG
CTGTCCACATGACAGGCAGGTATGGTGCTGGTCCCAGCAGTGGAAGTGTG
TGGGTACCACTGCTCCCATCACATTAGGTCAGGAAACAGAAAGTGAGATG
GAAGTAGAGCCAGGTCACCCCCACTAAGACCTGCTCTCCAGAAGTCCACT
TGCTCCAGCAAACCCAGACTCATAAGGGCTCCACAGCACTCTACCACAGT
GCATCCAGGCTGGGGGACCAAATATTCAGGAACCATTGAATGGCTAGGAA
GGGCCATTTTTCCCCACTCATACCCCATTCAACTTTTTTTTGAGAGGGGT
CCCCAAGGGGGAAACCCCGCCCTTTGTGGGGGGGCTCACATCCACACCTG
GGGGGCCACATTTTTAGGAGAATATTACACCTCAACATCTCTATATATAA
CAAAGGCTGTGTTTTTACTATCACTACAATCTCTATATTTT
NTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCCCACTGCCTGCACA
AAATATATGGACACATCTGTGATGGATTTTTGCTTAATTTGAAGTGGAAA
GGTCTACTGCTGAATTGATTCTTTGAGACAGGAAGACACAGCTTTAATCC
AGATCTTGAGGTGGGAAGAACCACCTCTAATCTGGGCCATGCCTTCCTTG
GAATCTATTGCTTTTGCCTGCTTGCTTTTGCCTCACTAAGCAAGTCCATT
CCTTCACTGGCATTAGAGCCTACTTCTTCAGGATTCCAGCATGTACTGAA
GACAAGCTGAGACACCCAGCCTAATGGACTGAACAAGTACTGGGTTTCTT
AGACCTTCTGTGCATAGGCACCCACCTTTGGATTAGCTGGACAACAGCCT
TTATTTAAGTCATTCTAATAAATCCTCTTTCTTTCTCTATATAAATCCAT
TCTATAAATTCAATTAATCCAGAGAACGCTGACCAATAAATCTGCTGACA
CACTGCTGCAAAGTTCTTACCACAGAGAGACAATGTAACTTTTAATTAGC
TAGATTTAATCATTCCATAATGACTTCAAAACACCATGGCGTACTTAGCA
ACTACACAGTTTTATCTAGTATAAAGTAAAACCCAAAACAGATATCAACA
AATCTTGGAGAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_g04.b1 MSMg01no317_g04.b1 CHROMAT_FILE:
MSMg01no317_g04.b1 PHD_FILE: MSMg01no317_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:23 2005
         (438 letters)



>mm_chr1_180111986_180112823
          Length = 838

 Score =  638 bits (330), Expect = 0.0
 Identities = 412/446 (92%), Gaps = 15/446 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatctaagcagagcatgaatcatagggaaccattaggagcacaggcgacctcccaaat 60
           |||||| || ||||||||||| |||||||| |||  |||||||||||| |||||||||||
Sbjct: 201 tgaatcaaaacagagcatgaaccatagggagccaagaggagcacaggcaacctcccaaat 260

                                                                       
Query: 61  agtccccaggattggtcagaaaggagtccagtaacttggaaggccttagtctgcatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtccccaggattggtcagaaaggagtccagtaacttggaaggccttagtctgcatttca 320

                                                                       
Query: 121 gtcactcccttggtggggggtggcagagctttctataagcataagcaaacactagtcaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gtcactcccttggtggggggtggcagagctttctataagcataagcaaacaccagtcaac 380

                                                                       
Query: 181 aggtgtttgaggaaggaaacattcatttttcactcagagtttgagaggtgctgtccacat 240
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 381 aggtgtctgaggaaggaaacattcattttttactcagagtttgagaggtgctgcccacat 440

                                                                       
Query: 241 gacaggcaggtatggtgctggtcccagcagtggaagtgtgtgggt---accactgctccc 297
           |||||||||||||||||||| |||||||||| |||||||||||||   ||||||   |||
Sbjct: 441 gacaggcaggtatggtgctgttcccagcagtagaagtgtgtgggtgtcaccact---ccc 497

                                                                       
Query: 298 atcacattaggtcaggaaacagaaagtgagatggaagtagagccaggtca----ccccca 353
           |||||| |||||||||||||||||||||| |||||||||||||||||| |    |    |
Sbjct: 498 atcacagtaggtcaggaaacagaaagtgaaatggaagtagagccaggttatggtc----a 553

                                                                       
Query: 354 ctaagacctgctctccagaagtccacttgctccagcaa-acccagactcataagggctcc 412
           ||||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||
Sbjct: 554 ctaagacctgctctccagaagtccacttgctccagtaagacccagcctcatacgggctcc 613

                                     
Query: 413 acagcactctaccacagtgcatccag 438
           ||||||||||||||||||||||||||
Sbjct: 614 acagcactctaccacagtgcatccag 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)