TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAACATCTTCCGATCCTTCTACAAAAGGCTATACTCAACACAA
CTGGAAAACCTGGATGAAATGGAACCACTTCTAGAAAGATCCCAGGTACC
AAAGTTAAATCAGGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTA
AAGAAATAGAAGCAGTCAATAATAATCTCCCAACCAAAAAAAAAAAAAAA
AAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAA
AGAAGATCTAATTCCAGTTTTTCACTTTCTATTCCAAAAAAATATAAGCA
GAAGGTACTCTATCCAACTCATTCTGTGAAGCCACAATTACAATGATACC
TAAGCCACAGAAAGATCCAACCCCGATAGAGAACTACAGACCAATTTCCC
TTATGAATATTGATGCAAAAATACTCAATAAAATTCTTGCTAAGCGAATC
CAAGAACACATCAAAACAATCATCCATCCTTACGAAGTAGGCATCATTCT
AGGGATGCAGGGATAGTTTAATATATGGAAATCCATCAATGTAATCCAGT
ATATAAACAAACTCAATTACGAAAACCACATGATGATTTCCTCAGATATG
GAGAAAGCATTTGACAAAATCAAACACTCATGCATGATAAAAGTCTTGGA
AAGATCAGGAATTCAAGGCCCATACCTAAATGTGATAAAACAATCTACAT
CAAACCAGTAGCCAACATCAAAATAAT

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGAGTATTCATGTGAATTCTTTGGTTG
TCACACAAGGTTATAGCATCTCCAGTTTTATAAAAGAAAATATGGGGCAT
TCACAGCAACTAAAAATTACGGCTCATACACAAGACAAAAGCTAACAGAC
AGAAACTCCCTGAGGATGGATTTATGATTGAACTTATGAGACAGATACTT
TAAATCAGTGATAATAAAGGTATTCAAAGAAATAATAGATACAGTGTCTG
CACAAAAAATGCATTAGACTTTTCTTTATCAAACAGTGCAGACCATATAC
TGATGCATAGATCAGTAAAAATTTTCAAATGATAATTCTATCATTAAAGC
ATTTATTCACTAAAACAATGATTATTTGTGGGTTGGACAGAATTATTCTA
ATAGAAAAATGAGTGGGAAAACTCTAAAGGTAATTAATTCAAAGGGACAG
GTTTGTAGAATAAAAAAGAAAAAGTGGGAAAGTAATAATCTCTGAGATTT
AGGATACATTAAATCGTAGTAACATATGCACACTGAGGATGAGGCTATTT
TCAGAGAGCAGAACTTTAAATTTGCTTCAACAGATGCAGATCATTGTTAG
ACAAAGATACACGGACTACATATCCCAAAATTATTATCTTTTTCATGTAT
GAGACACACTCAGATTTCAGTGTTTTCTTTAT

Query= MSMg01no317_g09.g1 MSMg01no317_g09.g1 CHROMAT_FILE:
MSMg01no317_g09.g1 PHD_FILE: MSMg01no317_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:24 2005
         (647 letters)



>mm_chr1_48182996_48184041
          Length = 1046

 Score = 1174 bits (607), Expect = 0.0
 Identities = 637/647 (98%), Gaps = 1/647 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagtattcatgtgaattctttggttgtcacacaaggttatagcatctccagttttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagtattcatgtgaattctttggttgtcacacaaggttatagcatctccagttttata 260

                                                                       
Query: 61  aaagaaaatatggggcattcacagcaactaaaaattacggctcatacacaagacaaaagc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 aaagaaaatatggggcattcacagcaactaaaaattatggctcatacacaagacaaaagc 320

                                                                       
Query: 121 taacagacagaaactccctgaggatggatttatgattgaacttatgagacagatacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacagacagaaactccctgaggatggatttatgattgaacttatgagacagatacttta 380

                                                                       
Query: 181 aatcagtgataataaaggtattcaaagaaataatagatacagtgtctgcacaaaaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcagtgataataaaggtattcaaagaaataatagatacagtgtctgcacaaaaaatgc 440

                                                                       
Query: 241 attagacttttctttatcaaacagtgcagaccatatactgatgcatagatcagtaaaaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 attagacttttctttatcaaacagtgcagaccatatactgatgcatagattagtaaaaat 500

                                                                       
Query: 301 tttcaaatgataattctatcattaaagcatttattcactaaaacaatgattatttgtggg 360
           |||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct: 501 tttcaaatgataattctatcattaaagcatatgttcactaaaataatgattatttgtggg 560

                                                                       
Query: 361 ttggacagaattattctaatagaaaaatgagtgggaaaactctaaaggtaattaattcaa 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 ttggacagaattattctaatagaaaaatgagtggaaaaactctaaaggtaattaattcaa 620

                                                                       
Query: 421 agggacaggtttgtagaataaaaaagaaaaagtgggaaagtaataatctctgagatttag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 agggacaggtttgtagaataaaaaagaaaaagtgggaaagtaataatctccgagatttag 680

                                                                       
Query: 481 gatacattaaatcgtagtaacatatgcacactgaggatgaggctattttcagagagcaga 540
           ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 gatgcat-aaatcgtagtaacatatgcacactgaggatgaggctgttttcagagagcaga 739

                                                                       
Query: 541 actttaaatttgcttcaacagatgcagatcattgttagacaaagatacacggactacata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actttaaatttgcttcaacagatgcagatcattgttagacaaagatacacggactacata 799

                                                          
Query: 601 tcccaaaattattatctttttcatgtatgagacacactcagatttca 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcccaaaattattatctttttcatgtatgagacacactcagatttca 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1046
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1036
Effective search space:   659932
Effective search space used:   659932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)