BAC Information

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BAC

Clone NameMSMg01-317H20
Chromosome1 (Build37)
Map Location 101,335,905 - 101,336,208
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317H20.T7 (MSMg01no317_h20.b1)MSMg01-317H20.TJ (MSMg01no317_h20.g1)
ACCAG437540AG437541
length740743
length of high quality
(start - end)
372 (48 - 419)304 (438 - 741)
definitionCHROMAT_FILE: MSMg01no317_h20.b1 PHD_FILE: MSMg01no317_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:30 2005CHROMAT_FILE: MSMg01no317_h20.g1 PHD_FILE: MSMg01no317_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGACCCTTTCAAAACAATAATGGTTAAACCAGGACATTGTGTA
ACAAAAAATAGTCTGTGCTCCAAAACATGCATTCTTAAGATATTTGTACC
AAACAACAGTGCCCTAATATATGCAACAAAACTCAAAGTATCTAAATACA
ATAGATGAAGTTTCAAATACACTATGGAGTTGGAGTCTTTAGCTCTTTCT
CATCTTAACTGACAAATCCAAGAAGTAGCAGAAATATTATTAAGGTTGTA
ATTAATTGGAACAACATCCTCTTCCAACTGAACCAATTAACCATGCTTCA
TCTGTGAACTGCATAACATAACCCTAATTCTGCGGCTCCAGATAGACCAT
ATATGGGGAAAATGGTCTTTCCCCCCGCTGTTTCTTTTGGTTTTTTGTTA
AGATGTAATTTAAGTCCACTAGTTACAATGTGCATGATGCACATGAAATA
TATTTTTAAAAAGAAAAAATATGTAAATAGTGAATTTAAGATTCAATGTT
AGGAAACAAAAGAAAGAGTCTAGTTTTAACCTACAGTCACACACACACAC
ACACACAAAGTCTACCTTGAATAGATTAAATGCTTAGATATATAATTTAA
AATTATTAACAGATATGTTTTTATGGCTACAGAAATGGTTCAAATTTTTA
TAAACCTGAAACTGTGCAAAGCAAAAAATCTCTTAATTTA
CACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGCAAGGATAAGAACTGTCA
AAGAACAGTCACATATTCTTACCCCAGCTCCTTTCATTGCACCATCCACT
AAATAATAGTTCTATTTTAACCTTAAGGCACTGGCCTCAGTGTCTCACAC
TTGTGTGTTCAGAGTTCTCCAGTTCTGTTATGTAATAGTCAGATTCTTAG
CAAATATATATTGAACAGAGTAGATAGATGACTTGGGCCAAGCCAATATC
TGCCTAGAACAAAAGAACTGTTTTTAATCACAATGCAAAAATCATTCACC
CTTTGTAATTTTTGTTTGTTTTAAAACCCACCCACCCAACAGATACAAGC
TCCACATCCATTACTTTTAAATTTCAACGCCTTATTATTATATCTCCAAT
AATAATGGACTCAAAAGTCTCCATCTCTTTCTCATTGAAACCAATATTTT
ACTCACACTGTTGTCTGCTGATGAATTATGCTGAAAACCTAAAAAGAAAC
AGAACAAATAAAACAATGACATCATTTTACTTTCTCCTAATTTCTACAGC
AAACCCTCTACCTTCATAACCTCATATCTTTATAGAAACTCCTCCTGCAA
CGCACTTTATTTCCCACTGTACAAGTGATACAACAGGCTCAGTTTTAATG
CTCTTATCTCATCAGTTGCATTTGAGTCAAAATGGAATACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_h20.g1 MSMg01no317_h20.g1 CHROMAT_FILE:
MSMg01no317_h20.g1 PHD_FILE: MSMg01no317_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:30 2005
         (304 letters)



>mm_chr1_101335705_101336408
          Length = 704

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatatctccaataataatggactcaaaagtctccatctctttctcattgaaaccaatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 ttatatctccaataataatggactcaaaagtctccatctctttctcattgaagccaatat 445

                                                                       
Query: 61  tttactcacactgttgtctgctgatgaattatgctgaaaacctaaaaagaaacagaacaa 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttacccacactgttgtctgctgatgaattatgctgaaaacctaaaaagaaacagaacaa 385

                                                                       
Query: 121 ataaaacaatgacatcattttactttctcctaatttctacagcaaaccctctaccttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataaaacaatgacatcattttactttctcctaatttctacagcaaaccctctaccttcat 325

                                                                       
Query: 181 aacctcatatctttatagaaactcctcctgcaacgcactttatttcccactgtacaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacctcatatctttatagaaactcctcctgcaacgcactttatttcccactgtacaagtg 265

                                                                       
Query: 241 atacaacaggctcagttttaatgctcttatctcatcagttgcatttgagtcaaaatggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atacaacaggctcagttttaatgctcttatctcatcagttgcatttgagtcaaaatggaa 205

               
Query: 301 taca 304
           ||||
Sbjct: 204 taca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)