Query= MSMg01no317_i14.b1 MSMg01no317_i14.b1 CHROMAT_FILE:
MSMg01no317_i14.b1 PHD_FILE: MSMg01no317_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:33 2005
(687 letters)
>mm_chr1_39355077_39356163
Length = 1087
Score = 1266 bits (655), Expect = 0.0
Identities = 676/683 (98%)
Strand = Plus / Plus
Query: 5 gaattcaataaagagcaacatcgaagggaggtaaagctgaaacgaagacggaacagaaaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataaagagaaacatcgaagggaggtaaagctgaaacgaagacggaacagaaaa 264
Query: 65 acctggcaacccaataagaagctcacgggaaagccccgcaagtagaacggatcaaagaga 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 acctggcaacccaataagaagctcacgggaaagtcccgcaagtagaacggatcaaagaga 324
Query: 125 agacagaatatctgaacttgaagatagaggaatcacagcacatgagcaaagatatggggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agacagaatatctgaacttgaagatagaggaatcacagcacatgagcaaagatatggggg 384
Query: 185 gagttaaaacacaggaaaggaatgcacgagaaatgagggacaccgtggaaaacaaaacct 244
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 385 gagttaaaacacaggaaaggaatgcatgaggaatgagggacaccgtggaaaaccaaacct 444
Query: 245 tttgattacaggcagaaggaaactttccaaaagtaaggaaagacatacccatacagatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgattacaggcagaaggaaactttccaaaagtaaggaaagacatacccatacagatac 504
Query: 305 gcacagagtgcaaaacaagaaaggccagaaaagaaaatccctgtggcatatcatacttaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcacagagtgcaaaacaagaaaggccagaaaagaaaatccctgtggcatatcatacttaa 564
Query: 365 accactaaatacagagcaaagagccctgaaaggggcaagggaaaatacagccacagccac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accactaaatacagagcaaagagccctgaaaggggcaagggaaaatacagccacagccac 624
Query: 425 acttggtgcactgtcctggcctctgctgtcccacacttaggcacaccctcctgactgcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acttggtgcactgtcctggcctctgctgtcccacacttaggcacaccctcctgactgcac 684
Query: 485 ggaaggaatacccctttatgggagtagattctcagcagcgccttcataggatctaggaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaaggaatacccctttatgggagtagattctcagcagcgccttcataggatctaggaaa 744
Query: 545 agggcatgtagaatgtttccagatccttcgaagctctgcttcgccccctccgcaaaatga 604
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 745 agggcgtgtagaatgtttccagaaccttcgaagctctgcttcgccccctccgcaaaatga 804
Query: 605 gaaacagatttagaaaagatgctgtttcaaagacgtggtcggtgcgacagcagtggcaag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaacagatttagaaaagatgctgtttcaaagacgtggtcggtgcgacagcagtggcaag 864
Query: 665 cttcccgtggacatccaccggag 687
|||||||||||||||||||||||
Sbjct: 865 cttcccgtggacatccaccggag 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_i14.g1 MSMg01no317_i14.g1 CHROMAT_FILE:
MSMg01no317_i14.g1 PHD_FILE: MSMg01no317_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:33 2005
(643 letters)
>mm_chr1_39527648_39528690
Length = 1043
Score = 984 bits (509), Expect = 0.0
Identities = 597/637 (93%), Gaps = 18/637 (2%)
Strand = Plus / Minus
Query: 4 tttgtagacatgtaggacctgccccttccctactgagaagttgggccctctgctcttctg 63
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 832 tttgtagac--gtaggacctgccccttccctactgagaagttgggccctttgctcttctg 775
Query: 64 gaaaatctgcttttcacctgtgttacttctcctctcctggtggctttatctgctgcctac 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 774 gaaaatctgcttttcacctgtgttacttctccgctcctggtggctttatctgctgcctac 715
Query: 124 agtcaactagagagggcccaatcgcaggggatgggggtggggtgggggagccctgtccct 183
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 714 agtcaactagagagggcccaatcgcaggggctgggggtggggtgggggagccctgtccct 655
Query: 184 tccctgtactctatctggccggactgcttcttgccatttggacatgcttagtaaatattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tccctgtactctatctggccggactgcttcttgccatttggacatgcttagtaaatattt 595
Query: 244 gttgattgaatgagaccaggaagatctgaaatgggagcctgtgagcttcaccctggaaat 303
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtcgattgaatgagaccagggagatctgaaatgggagcctgtgagcttcaccctggaaat 535
Query: 304 ggacactctgcatgttttggacataggaatgagtaccacaccattgcttctcaggtcttc 363
||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| |
Sbjct: 534 ggacactctgcatgttttggacataggaatgagtagcagaccactgcttctcacgtctcc 475
Query: 364 tgtgagcgtgggctgttggaaggaccggctgttgagtattgtcagtgccggctgatggtt 423
|||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct: 474 tgtgagcgtgggctgttg----------------agtattggcagtgccggctgttggtt 431
Query: 424 acacatagataaccttacagaagtgattctactcctcctgaccccacttgtttttctgac 483
|||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 430 acacataggtaaccttacagaaatgattctacccctccccaccccacttgtttttctgac 371
Query: 484 tgctatggggttctatcagactactggatttttatctcttttttaaagagatctcctatt 543
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 370 tgttatggggttctatcagactactggatttttatctctttttaaaagagatctcctttt 311
Query: 544 cacaaaggaaagaaaaactaaccaaaaaaccatccttactgcgctctcctgtagaagact 603
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cacaaaggaaggaaaaactaaccaaaaaaccatccttactgcgctctcctgtagaagact 251
Query: 604 agtgtcctgcaccatcctgagtatggaatctgtgtga 640
|||||||||| ||||||||||||||||||||||||||
Sbjct: 250 agtgtcctgcgccatcctgagtatggaatctgtgtga 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
