Query= MSMg01no317_l04.b1 MSMg01no317_l04.b1 CHROMAT_FILE:
MSMg01no317_l04.b1 PHD_FILE: MSMg01no317_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:44 2005
(619 letters)
>mm_chr1_51636640_51637658
Length = 1019
Score = 1139 bits (589), Expect = 0.0
Identities = 610/617 (98%), Gaps = 2/617 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctattctcctgcttcagcctcctgagtgctaggatcccaggcatatgccacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctattctcctgcttcagcctcctgagtgctaggatcccaggcatatgccacc 263
Query: 64 atacccaggtgtttttgttaacattcaaaacgagaagcaaaaaaaaaagaacctttattc 123
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 acacccaggtgtttttgttaacattcaaaacgagaagcaaaaaaaaa-gaacctttattc 322
Query: 124 agttaaggagagattatgaccatagtgagcctggccagcagagctacacctagtgagcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agttaaggagagattatgaccatagtgagcctggccagcagagctacacctagtgagcag 382
Query: 184 ggattctgaggccaggcgagggggatgctaatcttctccccagcctggattctgctgtca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggattctgaggccaggcgagggggatgctaatcttctccccagcctggattctgctgtca 442
Query: 244 gaaagaagcgtctctattcattccgggtcagggctcaagaataatcctaagtctctggtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaaagaagcgtctctattcattccgggtcagggctcaagaataatcctaagtctctggtg 502
Query: 304 gtcaaaggttttcagtccctctgtaattagttcctcattcgctcagactggctcgaatct 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 503 gtcaaaggttttcagtccctctgtaattagttcctcatttgctcagactggctcgaatct 562
Query: 364 gtgtaccaggagccccacccagacttcctccatgaacacaattactaaccctgctttccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgtaccaggagccccacccagacttcctccatgaacacaattactaaccctgctttccc 622
Query: 424 tttgcatctttacctctctcccacatgtacctgttgatgtcattgtctctgcagtcataa 483
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 623 ttcgcatctttacctctctcccacatgtacctgttgatgtcgttgtctctgcagtcataa 682
Query: 484 gaaaaagacaacgttctgagctggatttcagcactaggac-ttccctgccaggcatttcc 542
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 683 gaaaaagacaacgttctgagctggatttcagcactgggaccttccctgccaggcatttcc 742
Query: 543 agctctgcttccatttgatagggtcgagaattacacacagctttataaacacttggatag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agctctgcttccatttgatagggtcgagaattacacacagctttataaacacttggatag 802
Query: 603 cccacgtttcttctttc 619
|||||||||||||||||
Sbjct: 803 cccacgtttcttctttc 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_l04.g1 MSMg01no317_l04.g1 CHROMAT_FILE:
MSMg01no317_l04.g1 PHD_FILE: MSMg01no317_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:44 2005
(299 letters)
>mm_chr1_51806860_51807558
Length = 699
Score = 532 bits (275), Expect = e-155
Identities = 293/299 (97%)
Strand = Plus / Minus
Query: 1 ctctgtgtttgtttgtttgtttgtttttcataaatctatttgaaaaacacataaccaaca 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 525 ctctgtgtttgtttgtttgtttgtttttcataaatctatttgaaaaagagataaccaaca 466
Query: 61 tttaaacatacacatttattggttcagatccattttcactttagaaaaagtcactgaagc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 465 tttaaacatacacatttattggttcagatccgttttcactttagaaaaagtcactgaagc 406
Query: 121 agggctgtagaatgctttgttcctgttccagagaagcatgacataggaccctggatgtgc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 405 agggctgtagaatgctttgttcctgttccagagaagcatgagataggaccctggatgtgc 346
Query: 181 acagtgtatccacccagggtcattagcttttgaaactgcatgataagaagaggctgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acagtgtatccacccagggtcattagcttttgaaactgcatgataagaagaggctgagag 286
Query: 241 ccgttcagactggcaaatcttctctttgatgtgcaataaaacatccaatatcacttttg 299
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 ccgttcagactggcagatcttctctttgatgtgcaataaaacatccaagatcacttttg 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
