Query= MSMg01no317_l17.b1 MSMg01no317_l17.b1 CHROMAT_FILE:
MSMg01no317_l17.b1 PHD_FILE: MSMg01no317_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:46 2005
(686 letters)
>mm_chr1_83486244_83487329
Length = 1086
Score = 1178 bits (609), Expect = 0.0
Identities = 667/691 (96%), Gaps = 8/691 (1%)
Strand = Plus / Minus
Query: 4 ggaattcccaagctctctctaattacatttgtaacaatttgctatgttctacttacagat 63
||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 1015 ggaattcccaagcactttctaattacatttgtaagaatttgctatgttctacttacaggt 956
Query: 64 atgaagttttctctggaggttagtcataaaagtgacctcttgggaacctgaactgaaccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 atgaagttttctctggaggttagtcataaaagtgacctcttgggaacctgaactgaaccc 896
Query: 124 c--------aaaatagtcaacaaggaaaccatcatcttttgcaaattcattccctaaaat 175
| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 895 caaagtaggaaaatagtcaacaaggaaaccatcatcttttgcaaattcattctctaaaat 836
Query: 176 attcaacatttctcacttacccactgcagtaatactgtgtaaactaagtgcttaaaatat 235
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 attcagcacttctcacttacccactgcagtaatactgtgtaaactaagtgcttaaaatat 776
Query: 236 gtctaacactttgacctagaacaaaactttttcacgaatgacccttggtaatagcaaatt 295
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 775 gtctaacactttgacctagaacaaaactttttcacgaatgacccttggtgatagcaaatt 716
Query: 296 agaacaaatgaacacctggctttgtaagaaataatggttaggctaatgggttctagaatt 355
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agaacaaatgatcacctgactttgtaagaaataatggttaggctaatgggttctagaatt 656
Query: 356 aaggtgtctggactcaattcctaaccctcaatttatttgaatcacagaatattgcaagtt 415
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 655 aaggtatctggactcaattcctaaccctccatttatttgaatcacagaatattgcaagtt 596
Query: 416 ttcattatattttaattaacctgtcaaagttggactttacctagtttcaaaggaagatat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttcattatattttaattaacctgtcaaagttggactttacctagtttcaaaggaagatat 536
Query: 476 gagtcatgactccaatttaaaaattatcttccaaggtgtataattttatttgagaagaga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gagtcatgactccaatttaaaaattatcttccaaggtgtataattttatttgagaagaga 476
Query: 536 taaatccaagagtgctcactgagttaatttgtaaaaaggttataagacataaaatcctga 595
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 475 taaatccaagagtgctcactgagttaatttgtaaaagggttataaggcataaaatcctga 416
Query: 596 cttgaaaataacagttaacaactttaaacaactaattttttaccaactgtagttttcttt 655
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 415 cttgaaaataacagttaacaactttaaacaactaattttttaccaactatagttttcttt 356
Query: 656 tccaggtgtctttgtctttaatgatggaagg 686
||||||||||||||||||||||||| |||||
Sbjct: 355 tccaggtgtctttgtctttaatgatagaagg 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_l17.g1 MSMg01no317_l17.g1 CHROMAT_FILE:
MSMg01no317_l17.g1 PHD_FILE: MSMg01no317_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:46 2005
(298 letters)
>mm_chr1_83323629_83324326
Length = 698
Score = 522 bits (270), Expect = e-153
Identities = 291/298 (97%)
Strand = Plus / Plus
Query: 1 tctttgacattgccaaggtaaaccaaaaatatattctcacattctcttaggccatctaac 60
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tctttgacattttcaaggtaaaccaaaaatatattcttacattctcttaggccatctaac 260
Query: 61 agaaccgtagcaatctgctgagtcaacagagcctatactgagggccagagtgaaccaatg 120
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agaacggtagcaatctgctgagtcaacagaacctatactgagggccagagtgaaccaatg 320
Query: 121 catgtgtgcacatgcagcagaaataggctgttctcacctattaagcagtctcactctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtgtgcacatgcagcagaaataggctgttctcacctattaagcagtctcactctcct 380
Query: 181 tcaacactacaatgccaagaacagtgagtaagcttctgtaaagagtcttaactttggaga 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaacactacaatgccaagaacagcgagtaagcttctgtaaagagtcttaactttggaga 440
Query: 241 gatattttgagctcacacatttccagccactttgggatttgtgagaagaattataagt 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gatattttgagctcacacatttccagccactttgggatttgtgggaagaattataagt 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
