Query= MSMg01no317_m13.b1 MSMg01no317_m13.b1 CHROMAT_FILE:
MSMg01no317_m13.b1 PHD_FILE: MSMg01no317_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:50 2005
(290 letters)
>mm_chr1_87501755_87502445
Length = 691
Score = 507 bits (262), Expect = e-148
Identities = 283/290 (97%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 agcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttg 260
Query: 61 tcttcattgggatgaaatcactcctcataagattgttcatttatgcctctcttaccttcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tcttcattgggatgaaatcactcctcataagattgttcatttatgcctctcttagcttcc 320
Query: 121 gacacatacaaagctgtatgtttccccttagccactgcctttgctgtgtctcagatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacatacaaagctgtatgtttccccttagccactgcctttgctgtgtctcagatttaa 380
Query: 181 taatttttagacttctttgcttttttagtgtaggagaaagggtcacacttttgcttgtct 240
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 taatttttagacttcagtgcttttttagtgtaggagaaagggtcacccttttgcttgtct 440
Query: 241 tatcccatataaaaaaa-ttacattcatttatttattgtatgtgtgcagg 289
|| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 taccccatttaaaaaaaattacattcatttatttattgtatgtgtgcagg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no317_m13.g1 MSMg01no317_m13.g1 CHROMAT_FILE:
MSMg01no317_m13.g1 PHD_FILE: MSMg01no317_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:50 2005
(636 letters)
>mm_chr1_87463804_87464839
Length = 1036
Score = 1110 bits (574), Expect = 0.0
Identities = 622/638 (97%), Gaps = 4/638 (0%)
Strand = Plus / Plus
Query: 1 aggaatctgcctgagtagtccaaacaataaacttagctggtgggaccttgccatgaaatc 60
|||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 201 aggaatctgccttagtagtccaaacaataaacttagctggagggatcttgccatgaaatc 260
Query: 61 accactctctaaatcttgttatttccctccttaatatctttctgacaaggtggctcacac 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 accactctctaaatcttcttatttccttccttaatatctttctgacaaggtggctcacac 320
Query: 121 tgcagcggcctctgttttttaggtccatgaagcccccttcatgcaattcatattgcatcc 180
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgcagcagcctctgttttttaggtccatgaagcccccttcatgtaattcatattgcatcc 380
Query: 181 ttatattttgcatagttgagaatatattgaaatcatgttgccaaactcattctatgagac 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttatattttgcatagttgagaatatattgaactcatgttgccaaactcattctatgagac 440
Query: 241 agttttattcatatccttcacctgtttgactatattttcttgtatttctttatgtttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttttattcatatccttcacctgtttgactatattttcttgtatttctttatgtttatt 500
Query: 301 tgcttcctcttttaatgcttttacttgcttgaatgtatttccacgcatttccttaaggaa 360
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 501 tgcttcctcttttaatgcttttacttgcttgaatgtattttcatgtatttccttaaggaa 560
Query: 361 tttattcatgtcctt-tttaaaggcttttattagcttcattagattgaatttaaaatcct 419
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tttattcatgtc-ttctttaaaggcttttattagcttcattagattgaatttaaagtcct 619
Query: 420 cttcttgtgcttcagtttcattaggatatccagggtttgttgtagaaggatagctgcgca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttcttgtgcttcagtttcattaggatatccagggtttgttgtagaaggatagctgcgca 679
Query: 480 caactcacctctgtaggctgtcccagatggatcaattgggatagtgggcaactcttactg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caactcacctctgtaggctgtcccagatggatcaattgggatagtgggcaactcttactg 739
Query: 540 gaatgggattggttgggcagggttccaagatcattagttttcgag-ttcttgaaggtttc 598
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 740 gaatgggattggttgggcagggttccaagatcattagtttt-gaggttcttgaaggtttc 798
Query: 599 cacggggaagtaggattctcttggtttcccacaagact 636
||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cacggggaagtaggattctcttggtttcccacaagact 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|