BAC Information

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BAC

Clone NameMSMg01-317M13
Chromosome1 (Build37)1 (Build37)
Map Location 87,501,955 - 87,502,24487,464,004 - 87,464,639
singlet/doubletsingletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317M13.T7 (MSMg01no317_m13.b1)MSMg01-317M13.TJ (MSMg01no317_m13.g1)
ACCAG437758AG437759
length765713
length of high quality
(start - end)
290 (131 - 420)636 (78 - 713)
definitionCHROMAT_FILE: MSMg01no317_m13.b1 PHD_FILE: MSMg01no317_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:50 2005CHROMAT_FILE: MSMg01no317_m13.g1 PHD_FILE: MSMg01no317_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:50 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(87,501,955 - 87,502,244)(87,464,004 - 87,464,639)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGCGTGTTTCCGTACATACCTTCGCTAGCCTGAGTAGAGATTT
AATAATGTATTGATCTTTCTTTAGGACGTGAGCATAATGCCCACTTCTTT
TAATTCTATGGATTTCTACTTTAATTTCATTGAATCTTTGTCTTCATTGG
GATGAAATCACTCCTCATAAGATTGTTCATTTATGCCTCTCTTACCTTCC
GACACATACAAAGCTGTATGTTTCCCCTTAGCCACTGCCTTTGCTGTGTC
TCAGATTTAATAATTTTTAGACTTCTTTGCTTTTTTAGTGTAGGAGAAAG
GGTCACACTTTTGCTTGTCTTATCCCATATAAAAAAATTACATTCATTTA
TTTATTGTATGTGTGCAGGCGCCCCAATGTGTCTTTTAAGATCAGAGGAC
AACTTTGGGGAGTTGGTTCTCTCCTACTACCGTGTAGTTAGTTCTTAGGG
GAGCAAGCTCATGTCCACAGACTTGGTGGCAAGGCCTGTATCAGCTGAGC
CATCCTCCCAGACCCTCTTTTATTTACATTAGTTACAGTTTTTAAACGTA
CTCTGTTTTATAATTGTGCTATTATTAAATTATCCACATTTTGACTCATT
ATGGACACAGAGAAATACCTACCATGTTTGTATATATTTTCATTTTATTC
TTTTTATTTTTTGGCTTTCCTTTCTTTTTATGCCCTTTTGGTTTTAGTAA
AACATTTTATGAATC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAATCTGCCTGAGTAGTCCAA
ACAATAAACTTAGCTGGTGGGACCTTGCCATGAAATCACCACTCTCTAAA
TCTTGTTATTTCCCTCCTTAATATCTTTCTGACAAGGTGGCTCACACTGC
AGCGGCCTCTGTTTTTTAGGTCCATGAAGCCCCCTTCATGCAATTCATAT
TGCATCCTTATATTTTGCATAGTTGAGAATATATTGAAATCATGTTGCCA
AACTCATTCTATGAGACAGTTTTATTCATATCCTTCACCTGTTTGACTAT
ATTTTCTTGTATTTCTTTATGTTTATTTGCTTCCTCTTTTAATGCTTTTA
CTTGCTTGAATGTATTTCCACGCATTTCCTTAAGGAATTTATTCATGTCC
TTTTTAAAGGCTTTTATTAGCTTCATTAGATTGAATTTAAAATCCTCTTC
TTGTGCTTCAGTTTCATTAGGATATCCAGGGTTTGTTGTAGAAGGATAGC
TGCGCACAACTCACCTCTGTAGGCTGTCCCAGATGGATCAATTGGGATAG
TGGGCAACTCTTACTGGAATGGGATTGGTTGGGCAGGGTTCCAAGATCAT
TAGTTTTCGAGTTCTTGAAGGTTTCCACGGGGAAGTAGGATTCTCTTGGT
TTCCCACAAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_m13.b1 MSMg01no317_m13.b1 CHROMAT_FILE:
MSMg01no317_m13.b1 PHD_FILE: MSMg01no317_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:50 2005
         (290 letters)



>mm_chr1_87501755_87502445
          Length = 691

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttg 260

                                                                       
Query: 61  tcttcattgggatgaaatcactcctcataagattgttcatttatgcctctcttaccttcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tcttcattgggatgaaatcactcctcataagattgttcatttatgcctctcttagcttcc 320

                                                                       
Query: 121 gacacatacaaagctgtatgtttccccttagccactgcctttgctgtgtctcagatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacatacaaagctgtatgtttccccttagccactgcctttgctgtgtctcagatttaa 380

                                                                       
Query: 181 taatttttagacttctttgcttttttagtgtaggagaaagggtcacacttttgcttgtct 240
           |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 taatttttagacttcagtgcttttttagtgtaggagaaagggtcacccttttgcttgtct 440

                                                             
Query: 241 tatcccatataaaaaaa-ttacattcatttatttattgtatgtgtgcagg 289
           || ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 taccccatttaaaaaaaattacattcatttatttattgtatgtgtgcagg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no317_m13.g1 MSMg01no317_m13.g1 CHROMAT_FILE:
MSMg01no317_m13.g1 PHD_FILE: MSMg01no317_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:50 2005
         (636 letters)



>mm_chr1_87463804_87464839
          Length = 1036

 Score = 1110 bits (574), Expect = 0.0
 Identities = 622/638 (97%), Gaps = 4/638 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaatctgcctgagtagtccaaacaataaacttagctggtgggaccttgccatgaaatc 60
           |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 201 aggaatctgccttagtagtccaaacaataaacttagctggagggatcttgccatgaaatc 260

                                                                       
Query: 61  accactctctaaatcttgttatttccctccttaatatctttctgacaaggtggctcacac 120
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 accactctctaaatcttcttatttccttccttaatatctttctgacaaggtggctcacac 320

                                                                       
Query: 121 tgcagcggcctctgttttttaggtccatgaagcccccttcatgcaattcatattgcatcc 180
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgcagcagcctctgttttttaggtccatgaagcccccttcatgtaattcatattgcatcc 380

                                                                       
Query: 181 ttatattttgcatagttgagaatatattgaaatcatgttgccaaactcattctatgagac 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttatattttgcatagttgagaatatattgaactcatgttgccaaactcattctatgagac 440

                                                                       
Query: 241 agttttattcatatccttcacctgtttgactatattttcttgtatttctttatgtttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttttattcatatccttcacctgtttgactatattttcttgtatttctttatgtttatt 500

                                                                       
Query: 301 tgcttcctcttttaatgcttttacttgcttgaatgtatttccacgcatttccttaaggaa 360
           |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 501 tgcttcctcttttaatgcttttacttgcttgaatgtattttcatgtatttccttaaggaa 560

                                                                       
Query: 361 tttattcatgtcctt-tttaaaggcttttattagcttcattagattgaatttaaaatcct 419
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tttattcatgtc-ttctttaaaggcttttattagcttcattagattgaatttaaagtcct 619

                                                                       
Query: 420 cttcttgtgcttcagtttcattaggatatccagggtttgttgtagaaggatagctgcgca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttcttgtgcttcagtttcattaggatatccagggtttgttgtagaaggatagctgcgca 679

                                                                       
Query: 480 caactcacctctgtaggctgtcccagatggatcaattgggatagtgggcaactcttactg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caactcacctctgtaggctgtcccagatggatcaattgggatagtgggcaactcttactg 739

                                                                       
Query: 540 gaatgggattggttgggcagggttccaagatcattagttttcgag-ttcttgaaggtttc 598
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 740 gaatgggattggttgggcagggttccaagatcattagtttt-gaggttcttgaaggtttc 798

                                                 
Query: 599 cacggggaagtaggattctcttggtttcccacaagact 636
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cacggggaagtaggattctcttggtttcccacaagact 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)