BAC Information

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BAC

Clone NameMSMg01-318A12
Chromosome1 (Build37)
Map Location 71,206,796 - 71,207,138
singlet/doubletsinglet
Overlap geneLOC667900
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
Downstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318A12.T7 (MSMg01no318_a12.b1)MSMg01-318A12.TJ (MSMg01no318_a12.g1)
ACCAG437939AG437940
length727721
length of high quality
(start - end)
289 (78 - 366)344 (69 - 412)
definitionCHROMAT_FILE: MSMg01no318_a12.b1 PHD_FILE: MSMg01no318_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:07 2005CHROMAT_FILE: MSMg01no318_a12.g1 PHD_FILE: MSMg01no318_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGAAGCTCCGCNGGA
ATTCCATATTTTTTTCCCACAACACAACCTCTGTGAACNTCTTTGACTTN
TCTGAGTTATGAACTTCACTCCTCTAGGCCATTCATATATTGGAATTATA
TATTATTTGTACGTGGCTGATTAAATTTAGCATAGTTTCCTCAAGATTCC
CCACTCTGCAACAGCATATCCTTTTCTATTTAAGGATATATATGCATGTG
TGTATATATGTATATGTGTGTATACATATATATGTTGATGTATATACACA
CATATATATTCATATACAAATATCCTTTTTATTTGATTCTTTTTTCTATA
TATTCTGGTTATCCATTCATTTCTTGACTCGCCCCCACTTTTGGCTATTA
TTATTAAGGCTTTGTGCACATCCCCCCCACCGGATTCTCTCCAAGCACTA
TCTTCAATTCCCTGCAGCATAGACCCAGAAGCAGAATTTGAGCTCATACG
CTGATTTTATTTTTGAGTCATGAGAAAGTGCACTACTCTTTCCATACACG
ATGTACCATCTCACACTCCTACCAACAATACATAAAGGTTACAATGCGTG
TACACCCTCATCTACACGTGCTGCTTTCTGGTTCTGTTTGCATCACAGTC
ATCGTGAAGCCTGTGACGTATACAAGACTTTTAATATATAATCCAAGCCA
AATCTGCCTCTTCTCTGTCCTTTCCTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGGCTTCACACAGGCTAGACACTGAGCTATG
TCCTCACCCCTAATGGGGTGGGAGTTATAAATGAGAAGCTGAAATAATTT
CATCTTCTATCACTATGGTTGTATGTACTTAGGAAGGATTTTCTATTTCT
CTCAACTCTTGGATTTATGAATTTAGAGGGAGTCTTGGTTCTCAGAGGGA
AGACTTTACCTCATAGATACCCAGGGCATTATAGCTGTTGCTTAGAAACC
TTAAGGTCTTTATAACCAGGGAGCAGCAAGCAAGAAATAGAGTCATCCTG
TTCCTAAGATTAATTGGCCCTAACAGTCAGCAAGATTGAGAACCGTTTTG
ACCTATTATATTTCCCCCCCCAACATATTTGGCATCTAGATAAACACTTG
AATACTTCTTGGTAAACCCTTCCCCAATTTTAATGTTAAAAGACAGCATT
TGATATCTTGAGAAAGGAGAAGTTACCAGGCCACTGACCTCATAATCAAT
AAGGGGCAGGGGGACTTGTCTGCAGCATAAGAAACAGCTGTGAAAGAGCA
GACTATCTGGATGGAAGAGCAAAACAGGACATCTTGGAGCAGTTCTAGAC
TAAAGACTAGAGACCAAGATGAAGACTATATTTTTATTCCCATCCTCTCC
CTCATACTTTCCCATGGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_a12.g1 MSMg01no318_a12.g1 CHROMAT_FILE:
MSMg01no318_a12.g1 PHD_FILE: MSMg01no318_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:07 2005
         (344 letters)



>mm_chr1_71206596_71207342
          Length = 747

 Score =  582 bits (301), Expect = e-170
 Identities = 332/343 (96%), Gaps = 3/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcttcacacaggctagacactgagctatgtcctcacccctaatggggtgggagttat 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 201 agggcttcacacaggctagacactgagctatgtccccacccctaatggggtgggaattat 260

                                                                       
Query: 61  aaatgagaagctgaaataatttcatcttctatcactatggttgtatgtacttaggaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgagaagctgaaataatttcatcttctatcactatggttgtatgtacttaggaagga 320

                                                                       
Query: 121 ttttctatttctctcaactcttggatttatgaatttagagggagtcttggttctcagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctatttctctcaactcttggatttatgaatttagagggagtcttggttctcagagg 380

                                                                       
Query: 181 gaagactttacctcatagatacccagg-g--cattatagctgttgcttagaaaccttaag 237
           |||||||||||||  |||||||||||| |  |||||||||||||||||||||||||||||
Sbjct: 381 gaagactttaccttgtagatacccaggagtccattatagctgttgcttagaaaccttaag 440

                                                                       
Query: 238 gtctttataaccagggagcagcaagcaagaaatagagtcatcctgttcctaagattaatt 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctctttataaccagggagcagcaagcaagaaatagagtcatcctgttcctaagaataatt 500

                                                      
Query: 298 ggccctaacagtcagcaagattgagaaccgttttgacctatta 340
           |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccgtaagagtcagcaagattgagaaccgttttgacctatta 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 747
Length adjustment: 9
Effective length of query: 335
Effective length of database: 738
Effective search space:   247230
Effective search space used:   247230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)