BAC Information

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BAC

Clone NameMSMg01-318C06
Chromosome1 (Build37)
Map Location 91,772,200 - 91,940,431
singlet/doubletdoublet
Overlap geneCentg2, Gbx2, Asb18, Iqca
Upstream geneLOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneCxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318C06.T7 (MSMg01no318_c06.b1)MSMg01-318C06.TJ (MSMg01no318_c06.g1)
ACCAG438019AG438020
length735742
length of high quality
(start - end)
222 (77 - 298)297 (73 - 369)
definitionCHROMAT_FILE: MSMg01no318_c06.b1 PHD_FILE: MSMg01no318_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:15 2005CHROMAT_FILE: MSMg01no318_c06.g1 PHD_FILE: MSMg01no318_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,772,200 - 91,772,417)(91,940,135 - 91,940,431)
sequence
CCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCCAGTGTCCCTAAAGACTTTACCACAGGCCATGCTTCTCC
GTGCTACAGAGCTGTGCAGCCATGCTGTGTCTGGGGCCAGGAGCTGCTCC
AGCCCCTGCCCCGAGGTCTCTCCATGAGAAAGCTCATCTCTCAGAGTTCA
CCTTGCCTGGAAAGCCAATGACAGAAAGTAGGCTAGATTCCATTGCTTGT
GGAAAATAAAACGTCTGGCCAGGTTTCTGCCTCCTGACCCCTTATTTAGA
GGTTCGGTGACCTTAATGGAATAGTTTCTATGACCCTGATTAAATAACAA
AGCTTTTTCTACACATATTTTTTCTTCACCCCCTTCCCATGAATTGTAAT
GTAGTCAGGTCTACTTGACTCCCCACACATTGTAAAAATTGCCTATTAGG
TAGATGAATTTGACAGAGAGAGAGATATACAGAGAGATAGAGAGATAGAC
AGACAGATTCAGCCATACCGATAGCCACCGATCCCCCCCTGTTTCCCTCT
ATCCGCTCACCCCTTTTCTTTTCTCTACTTTCTTTTTCGTCTTTTATTCT
CTACACCCTCTTCCTTTATTTTCTTCTCTTCCTCCTTCCTTTTTTTTTGC
CCCCTATTCTTTTCCCCCACCTTTTTTTTAACTCTCTCCTCGCCTTCCAT
TTCCTCCTTTAAGTTTCCAACCTTTTTTTTCCATA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCCCAATTCCCAGAAGAAAAGAACACAAGGTAAGTCTA
AAGTAATACTTGCAGAGAATTTTCCCAAATTAAAAGCATGAGGTATCAGA
TTAAAATAAATTCCAAGCAGCCAGTTAGACAAATAGGAGCAAACCCATTT
TTGTCAATTATTACAAGTCTAAGCATAAGATAACAAACTAAGCTTTAAAG
CTATCAAATTGCCCCAAAGAAACAGCATGGGCAATCACACATCTCTTTGA
CATCATGAGACACTAGAAAACAGTAACTTATATCTTCAGAGTGCAGGGGA
GAAACGATCATCTAGCTAGTATTTATATCCCGCTAAACTAGCACCCAAAT
GACAGGAAACAAGGTTTTTCTACACCCACACAGTCTCCCACTCACAGAAA
ATAACTTGTTAGCAGCAGGTTAAACTATGCCTAGTTTGGCTCCCAGCATC
CACATCAAGTGATGCACAACTGCTACTACACCAGCTCCAGGGGATCTGAT
GCCCTCTTCTGGCCTCCCCAAGTATCTGCACACACCCACACATTACTTAC
ACCCTTTTTTCTGATAGATGAGATAGAGAGTATAGAGATAGAGATAGACA
TAGAGCTATGATACAGTAGAAGGTTAATACTATAATATTTGACCCTTCTT
TTCGCTTTCTTGCCATCGTTATATCATTCCCTTATCCATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_c06.b1 MSMg01no318_c06.b1 CHROMAT_FILE:
MSMg01no318_c06.b1 PHD_FILE: MSMg01no318_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:15 2005
         (222 letters)



>mm_chr1_91772000_91772621
          Length = 622

 Score =  406 bits (210), Expect = e-118
 Identities = 216/218 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaccacaggccatgcttctccgtgctacagagctgtgcagccatgctgtgtctgggg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaccacaggctatgcttctccgtgctacagagctgtgcagccatgctgtgtctgggg 260

                                                                       
Query: 61  ccaggagctgctccagcccctgccccgaggtctctccatgagaaagctcatctctcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggagctgctccagcccctgccccgaggtctctccatgagaaagctcatctctcagag 320

                                                                       
Query: 121 ttcaccttgcctggaaagccaatgacagaaagtaggctagattccattgcttgtggaaaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaccttgcctgtaaagccaatgacagaaagtaggctagattccattgcttgtggaaaa 380

                                                 
Query: 181 taaaacgtctggccaggtttctgcctcctgacccctta 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaacgtctggccaggtttctgcctcctgacccctta 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no318_c06.g1 MSMg01no318_c06.g1 CHROMAT_FILE:
MSMg01no318_c06.g1 PHD_FILE: MSMg01no318_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:15 2005
         (297 letters)



>mm_chr1_91939935_91940631
          Length = 697

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagaaaagaacacaaggtaagtctaaagtaatacttgcagagaattttcccaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cagaagaaaagaacacaaggtaagtctaaagtaatacttgcagagaattttcccaaatta 438

                                                                       
Query: 61  aaagcatgaggtatcagattaaaataaattccaagcagccagttagacaaataggagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaagcatgaggtatcagattaaaataaattccaagcagccagttagacaaataggagcaa 378

                                                                       
Query: 121 acccatttttgtcaattattacaagtctaagcataagataacaaactaagctttaaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acccatttttgtcaattattacaagtctaagcataagataacaaactaagctttaaagct 318

                                                                       
Query: 181 atcaaattgccccaaagaaacagcatgggcaatcacacatctctttgacatcatgagaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 317 atcaaattgccccaaagaaacagcatgggcaatcacacatctctttgaaatcatgagaca 258

                                                                    
Query: 241 ctagaaaacagtaacttatatcttcagagtgcaggggagaaacgatcatctagctag 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctagaaaacagtaacttatatcttcagagtgcaggggagaaacgatcatctagctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)