BAC Information

Click to search

BAC

Clone NameMSMg01-318D24
Chromosome1 (Build37)
Map Location 69,558,596 - 69,558,947
singlet/doubletsinglet
Overlap genenone
Upstream geneErbb4, LOC667842, EG241084
Downstream geneIkzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318D24.T7 (MSMg01no318_d24.b1)MSMg01-318D24.TJ (MSMg01no318_d24.g1)
ACCAG438101AG438102
length733731
length of high quality
(start - end)
380 (58 - 437)649 (83 - 731)
definitionCHROMAT_FILE: MSMg01no318_d24.b1 PHD_FILE: MSMg01no318_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:24 2005CHROMAT_FILE: MSMg01no318_d24.g1 PHD_FILE: MSMg01no318_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CANNNNNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGA
AGATCCGCGGAATTCTTTAATGTTTACCACCAAATACTTATTAAGAAGTG
TGCTATCTTTCTTACTTTTCCTACAAAATATCATAAGCAATCAATGTCTA
TGTGCAAATATGTCTGGGGGGCAGAGGAAAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGATTGAAACAGAGAGAGA
CAGAGAGAGAGACAGAGAGAGAGAGAGGGTTGCAGAAGACAGAACCTTCG
GCTTTCCACCTGCTACCAAGTGTTCTGTCAATGAGCTGATCTATAGACCT
ATTTTTGAATTGAGTTTTCCATGGTTCAAACCTGCCACTAGCAGGTTCTC
TAAGGAAGAACTGAACTTATTGCACTTTGAAAACCCCGCCAGGGGGCTCT
TTATCAAATCGATACTTCAGAAAACTCTTCTGCCTTTGCCTATGGTCAGG
AGACATCCTCTTTCTTACCTCCACTTTTCACTACACATTTACTTCCCCTA
TAATAGCTCCTCAAATGAGCAAAAGGGTAATGATAGGTTTAAATTAAATT
ATTCACTGCCAAATGATTGAATAGCTTTCCAGCTCACAGAGACTCTGAAT
AGACTATTCAGAGTCTCTGTGAGCTGGAGAGAAACTTAGAGTAGCCTTGA
GATCAACTCTGATGATGCATACACAGATTTCAG
CAAANTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATATGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCTACTATGCCCACACCACCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACGCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAGAGTCAGTTTTAAGTGATTTTTTAAGGTTGTTAAACACATCAAGA
TAACCCTGTGGTGTAAAAATAAATAAATGAATGCATAATAAAAAATGAAT
GAATGAATAAGTAAATGAAAGGTTGCGAATCATATCGCTGCATCTCANTT
CTCCATGAAAAGGGTCATGTGCTGCCTTCATCTTGTGTAGTTTTTGATAG
ACCCCTGGCATGGTCCCTTTTATGTCTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_d24.b1 MSMg01no318_d24.b1 CHROMAT_FILE:
MSMg01no318_d24.b1 PHD_FILE: MSMg01no318_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:24 2005
         (380 letters)



>mm_chr1_69558176_69558955
          Length = 780

 Score =  596 bits (308), Expect = e-174
 Identities = 348/374 (93%), Gaps = 22/374 (5%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctttaatgtttaccaccaaatacttattaagaagtgtgctatctttcttactttt 62
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattctttaatgtttattaccaaatacttattaagaagtgtgctatctttcttactttt 713

                                                                       
Query: 63  cctacaaaatatcataagcaatcaatgtctatgtgcaaatatgtctggggggcagaggaa 122
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   
Sbjct: 712 cctacaaaatatcataagcaatcaatgtctatgtgcaaatatatctggggggcagag--- 656

                                                                       
Query: 123 agagagagagagagagagagagagagagagagagggagagagagagagagagagattgaa 182
                ||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 655 -----gagagagagagagagagagagagagaga--gagagagagagagagagagattgaa 603

                                                                       
Query: 183 acagagagagacagagagagagacagagagagagagagggttgcagaagacagaaccttc 242
           ||            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ac------------agagagagacagagagagagagagggttgcagaagacagaaccttc 555

                                                                       
Query: 243 ggctttccacctgctaccaagtgttctgtcaatgagctgatctatagacctatttttgaa 302
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 554 ggctttccacctgctaccaagtgttctgtcaatgagctgagctatagacctatttttgaa 495

                                                                       
Query: 303 ttgagttttccatggttcaaacctgccactagcaggttctctaaggaagaactgaactta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgagttttccatggttcaaacctgccactagcaggttctctaaggaagaactgaactta 435

                         
Query: 363 ttgcactttgaaaa 376
           ||||||||||||||
Sbjct: 434 ttgcactttgaaaa 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)