BAC Information

Click to search

BAC

Clone NameMSMg01-319D06
Chromosome1 (Build37)
Map Location 120,426,361 - 120,426,660
singlet/doubletsinglet
Overlap geneClasp1
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
Downstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319D06.T7 (MSMg01no319_d06.b1)MSMg01-319D06.TJ (MSMg01no319_d06.g1)
ACCAG438792AG438793
length730731
length of high quality
(start - end)
300 (70 - 369)342 (72 - 413)
definitionCHROMAT_FILE: MSMg01no319_d06.b1 PHD_FILE: MSMg01no319_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:30 2005CHROMAT_FILE: MSMg01no319_d06.g1 PHD_FILE: MSMg01no319_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTCACCTCTTATCCTCATGGGCTCCTTTATGATGTGATACATAGAAAAA
GAAATTCTGTCTGCTGTTTTGCCAGAAATCTTTCCATAAATTCCCCAAAC
TCCATTAAAGGGCATTTTGTGGTAAGAGTGATATTTCAAATGTTCGGTCA
TTTAAGCCACAAGAGAAAAAACACCCACTTGCAACATTAGTTCCAAGGCT
AATCTACAGAAAGAGCTAAAGTAAGCACAGAAAAATTAGTTTTATAGATT
AAGTGGTCAAAACTCATTCATATAATCTCCATTAATCCACCCACCCACCT
ACCCATCCACAATCTGTCTGTCTGGACCGCAAAATCAACTTGTCTTGTTA
GTATGTGCTCACAGCCCCCACCCCCCCCGAGACTACGGCATGGGAAGTGT
AGAGGAAACAGGCAATGAAATATACTTCATCTTCCTTACACGCAGTCAAG
CTAGAAAGCCTGTCTGAAATGCTGGCAACGTTTTGAAAAACCACTTGTTT
TGTACTTCCTGATAAGACTCCACCCTGTATCATAGTGTTTAAGGGTGATC
CTTACTTTTGCCTTAAAAAGAATTAACTTTCATTTTATGTGTGTTTGAAC
ATGTCTTCAGGAGTGTATTCTATGTGAGTGCAATGTCTGCATGAGCCAGA
AAAGGGCATCAGATCCCACTGTGTTGGAGT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGATCCACAATGCCTATGTAAGCACAGCGATG
TCTGCCTGGCTTCTCAACTCTGGCGAGGAAGAGATAAACATCTCTGGGTC
ATGCCGTCCAGATAGTCTAGGCAAGTCACTGGGCACCAGGTTTAGTGAGA
GACCCTGACCCCAAAATTGAGGACTTAGCTAGTAAAACCACTTGCCCACA
AGCTTGGTGATATGGATTCAGTTCTTGGAGTCCAAACAAAATTGGAAGGA
GAGGTGTGCTTTCTCAAAGTTGTCCTATGACCTCCATGGACATGTAGTAG
CATTTGCTGCCCTCCCCCCACCTCAATCCCCCAGTAATAATAAATTTGAG
AGGCTAGAAAGGTGGCCCCACCGCCCCCCGTGGTGGTGCATGCCTTTAAT
CCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAGGGCCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTGCTCAGAGAAACCC
TGTCTTGAAAAAAAACCAAATCGAACAAAAAAACCCAAAATAACTACTTA
CAACAAGATGGCTCCATGATTAATAGCAGTGATTGCAGCCGGTTCTGGTG
GAACATGCCTTTAATCCCATCGTGTTCCTGTTAATGAAGGATTGATAGAT
TGACCGTAATGATTGATTGACTGATATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_d06.b1 MSMg01no319_d06.b1 CHROMAT_FILE:
MSMg01no319_d06.b1 PHD_FILE: MSMg01no319_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:30 2005
         (300 letters)



>mm_chr1_120426161_120426860
          Length = 700

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggctcctttatgatgtgatacatagaaaaagaaattctgtctgctgttttgccagaaat 60
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 500 gggctcctttatgatgtgatacatagaaaaagaaagtctgtctgctgttttgtcagaaat 441

                                                                       
Query: 61  ctttccataaattccccaaactccattaaagggcattttgtggtaagagtgatatttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctttccataaattccccaaactccattaaagggcattttgtggtaagagtgatatttcaa 381

                                                                       
Query: 121 atgttcggtcatttaagccacaagagaaaaaacacccacttgcaacattagttccaaggc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 atgttcggtcatttaagccacaagagaaaaaacacccacttacaacattagttccaaggc 321

                                                                       
Query: 181 taatctacagaaagagctaaagtaagcacagaaaaattagttttatagattaagtggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatctacagaaagagctaaagtaagcacagaaaaattagttttatagattaagtggtca 261

                                                                       
Query: 241 aaactcattcatataatctccattaatccacccacccacctacccatccacaatctgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaactcattcatataatctccattaatccacccacccacctacccatccacaatctgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)